Chr:
Chr4
Start:
17061856
End:
17064191
Strand:
+
Ref_name:
OSA-LNCN4512
Sequence
(OSA-LNCN4512.1):
GUUCCAUCUUCCAAUUUCCAGCAUCCUUUUUGAACAGUAUUUUCUCGGUUUCCCCGCUUCUGCUUCUUUUUUUUUUAAAAAAAUUAUUUCUCUCUCUUUAAUUUGUUCGUGCAAGUGCGACGCAUAGCAGCCAACCUCGCCGAGGCGGAGACGACGGCGAUAUUGUCUCGUUCUCUCGCCUUCCCUCGUCGCCGGAUUUCGUCUCGCAGGAUUCGUCGCGCGCGUCCCCGUCGCCUGAUUCCUUUCGCCGUCCUCCUCGCUUGAUUCAUCUCGCAGGCGGCCGGUUCGUCCAAUGGCGAGGGAGGGAAUAUCCUACAUAUUAUUGAAGAAAAUGGAGGAGAUAACUGGUUCACAUGGCGAGCUGCUGUUGUCGUUGGGUGGAAGCAGGUAGCGGGCACAUGCUCUGGCAGUGAUGGUGAAGUUGGUGUGCUUGGUGACGUAAUUUGAUUACCUUUUGAAGUGAUGAGGAUGCUCAGUUUGGCUGCAAGGUUACGGUAGUGGACAUGUACUGCAGUAUUCUACAGGGGUGAAAAUCUGCAAAAAUCUAAGAGUUAGUAGGGUAGCAAAAACAAUGGUAUCAACGGGAAAAGAGAAGCUAACUUACCAGUUUGCAUUUUGAGACAUUGUAGUCAAUCCUAGGCUAGCUAGAAACUGAAUCUUCUGCAUGUUCCUUUUCUCCGUUUCUUCCUAGCAGUCUUAUUCACUCCCAUGUCCCUCAACAUCAACUGUUAUAAUAAUAAACAGGACAAACGAAAAUUGAACUGUUAAAAUUUGUUAUUAACGGGACAAACGAAAAUUGAAUUGUCGUGCUGUUGCAAUUCCAUUUUUGUCAGUACCUUUCCAAUCUGUUAAUGUUAAUAUGACCUCGAUAUUCAUGGUUUCUAUCUAGGAAAAAUGAAAGAGGAGGUAAAUUUAUCAUGAAGUGCUUAUGUAUCAAAAGUUUUGAAGUUAUGUGACACAUCGAUAUUUAUGCAUGAGAGUAUGAACUCCUCAUAAUAAUCUCAUAUAAUAUAAAUACACCAGCUAUCUCUAGAACAGUGACAAUUCUUAUUUCCAAA
Sequence
(OSA-LNCN4512.2):
GUUCCAUCUUCCAAUUUCCAGCAUCCUUUUUGAACAGUAUUUUCUCGGUUUCCCCGCUUCUGCUUCUUUUUUUUUUAAAAAAAUUAUUUCUCUCUCUUUAAUUUGUUCGUGCAAGUGCGACGCAUAGCAGCCAACCUCGCCGAGGCGGAGACGACGGCGAUAUUGUCUCGUUCUCUCGCCUUCCCUCGUCGCCGGAUUUCGUCUCGCAGGAUUCGUCGCGCGCGUCCCCGUCGCCUGAUUCCUUUCGCCGUCCUCCUCGCUUGAUUCAUCUCGCAGGCGGCCGGUUCGUCCAAUGGCGAGGGAGGGAAUAUCCUACAUAUUAUUGAAGAAAAUGGAGGAGAUAACUGGUUCACAUGGCGAGCUGCUGUUGUCGUUGGGUGGAAGCAGGUAGCGGGCACAUGCUCUGGCAGUGAUGGUGAAGUUGGUGUGCUUGGUGACGUAAUUUGAUUACCUUUUGAAGUGAUGAGGAUGUAGCUCAGUUUGGCUGCAAGGUUACGGUAGUGGACAUGUACUGCAGUAUUCUACAGGGGUGAAAAUCUGCAAAAAUCUAAGAGUUAGUAGGGUAGCAAAAACAAUGGUAUCAACGGGAAAAGAGAAGCUAACUUACCAGUUUGCAUUUUGAGACAUUGUAGUCAAUCCUAGGCUAGCUAGAAACUGAAUCUUCUGCAUGUUCCUUUUCUCCGUUUCUUCCUAGCAGUCUUAUUCACUCCCAUGUCCCUCAACAUCAACUGUUAUAAUAAUAAACAGGACAAACGAAAAUUGAACUGUUAAAAUUUGUUAUUAACGGGACAAACGAAAAUUGAAUUGUCGUGCUGUUGCAAUUCCAUUUUUGUCAGUACCUUUCCAAUCUGUUAAUGUUAAUAUGACCUCGAUAUUCAUGGUUUCUAUCUAGGAAAAAUGAAAGAGGAGGUAAAUUUAUCAUGAAGUGCUUAUGUAUCAAAAGUUUUGAAGUUAUGUGACACAUCGAUAUUUAUGCAUGAGAGUAUGAACUCCUCAUAAUAAUCUCAUAUAAUAUAAAUACACCAGCUAUCUCUAGAACAGUGACAAUUCUUAUUUCCAAA
Sequence
(OSA-LNCN4512.3):
AAAAAUUAUUUCUCUCUCUUUAAUUUGUUCGUGCAAGUGCGACGCAUAGCAGCCAACCUCGCCGAGGCGGAGACGACGGCGAUAUUGUCUCGUUCUCUCGCCUUCCCUCGUCGCCGGAUUUCGUCUCGCAGGAUUCGUCGCGCGCGUCCCCGUCGCCUGAUUCCUUUCGCCGUCCUCCUCGCUUGAUUCAUCUCGCAGGCGGCCGGUUCGUCCAAUGGCGAGGGAGGGAAUAUCCUACAUAUUAUUGAAGAAAAUGGAGGAGAUAACUGGUUCACAUGGCGAGCUGCUGUUGUCGUUGGGUGGAAGCAGGUAGCGGGCACAUGCUCUGGCAGUGAUGGUGAAGUUGGUGUGCUUGGUGACGUAAUUUGAUUACCUUUUGAAGUGAUGAGGAUGUUUGGCUGCAAGGUUACGGUAGUGGACAUGUACUGCAGUAUUCUACAGGGGUGAAAAUCUGCAAAAAUCUAAGAGUUAGUAGGGUAGCAAAAACAAUGGUAUCAACGGGAAAAGAGAAGCUAACUUACCAGUUUGCAUUUUGAGACAUUGUAGUCAAUCCUAGGCUAGCUAGAAACUGAAUCUUCUGCAUGUUCCUUUUCUCCGUUUCUUCCUAGCAGUCUUAUUCACUCCCAUGUCCCUCAACAUCAACUGUUAUAAUAAUAAACAGGACAAACGAAAAUUGAACUGUUAAAAUUUGUUAUUAACGGGACAAACGAAAAUUGAAUUGUCGUGCUGUUGCAAUUCCAUUUUUGUCAGUACCUUUCCAAUCUGUUAAUGUUAAUAUGACCUCGAUAUUCAUGGUUUCUAUCUAGGAAAAAUGAAAGAGGAGGUAAAUUUAUCAUGAAGUGCUUAUGUAUCAAAAGUUUUGAAGUUAUGUGACACAUCGAUAUUUAUGCAUGAGAGUAUGAACUCCUCAUAAUAAUCUCAUAUAAUAUAAAUACACCAGCUAUCUCUAGAACAGUGACAAUUCUUAUUUCCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
36.99%
ME_num:
MEP:
48.78%
HE_num:
HEP:
14.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.76
Avg Expression:
11.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.52960517076754 | 0.000731975502991269 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.34509955073357 | 0.00902228152944352 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.59930291485735 | 3.45250642909454e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.45300135949916 | 0.00293751864125543 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.34100245636638 | 0.000633459442123948 |
| 6 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.2481464833813 | 0.00300426671215648 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.31726791904081 | 8.01384238979004e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.94783079300356 | 1.08639741708036e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.28855844210565 | 0.00998301999643881 |
| 10 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.85823242600292 | 0.0023610453035473 |