Chr:
Chr4
Start:
15925072
End:
15926539
Strand:
-
Ref_name:
OSA-LNCN4494
Sequence
(OSA-LNCN4494.1):
ACUGCCGAGUGAGACAUGCAUGUCGGUGAAAAUUAAUUAUUGGCUCAGUCUUGUCUUUACGUCUUCACCUUCAAAAUCCCACAGCUAUUGUCUAAUAAAACAAGCCCUCCUCUGUAUCUAAGAUAAAUGUACUAUAUAAAUGAAAAUAAAACAUUUAUCAAUUAUAGAAAACCAUCGAGACCAAAUAUGGAGUAAUGUAACCGUCCAGUCACAUGUCAUCGACAGUGAAAGAUAUUCAUGUAAGGUUUUCCACGCAAUUAUGAUUUAUGGCACACAGUCCAGAUCUUAAUGCAAAUAAUUUUGUGCUACAUAUCUUUACAAAUGUAUGGUUCCAAAUUCUUCUCGAGAAAAAAGAAAAAGAAAUUUAUGCUUCAUGUUGCUAUUACAACAAAACCUAAUAACUUAUCCUUUCAGAAUUAAGAGACCAAGUUGCUGCGAACGAAAGAAAGGAUGUCAAAUGUAUAAUAUAAUCAGCUAAACAAACUUAAGAAUUUAAGUGUGCUUCAAGCCGGGUUCAAGUUUUCCUUUGAUCAAAAUUCUCUCUUACAUUUUUUUUCAGUAACUUCCUAAUCCUCUCUCCAUUCUAGUUUUACUAAUGAAUAUGAAAUUAAUUAUCUACGAGAUCUAGAAAACAAACUAAAUGCCUUUUUUUUCAUUGAUAGAAAGAUGUCCAUUUUUCUGGCAGUUGUCCCAAUAAUACUACUACCUCCGUUCUAAAAUGUAACAACUUUUGGCUAUGAAUCUGGACACACAGUUAUAUUUUGGAACGGAGGGAGUAUAUACCACAUCACCUCAAAUUUUUAUAACCCACGGAUGAUUAAUCUAUAGGCGAAAUCGUCUUCCUCUUUUUUCUUCUCCGAUGAAUCCACAACACCGCAGUUUUGUCUUUGGAUGAUCCAUCUAUAUUAUUUCCCUUGUUUUUCUUCUCUCAUGAAGUUACGUAACUUUAGUUUUACUUUAAAUGGUCAAUUUAUAUAAGAUUUAAAUUAUCACAAACCAUAUCAUCUGAAUUAUUUAUAACUUUUUUAACAUGAUCGAUCAAAUAUUCAGUCCAGCUAAAAAACAAACCCAUCUUACAUCUUAUUUACAAACCUUAUUUCUAUCAUUAUCAUGCAAACUUUCCCCACUACCACGCAUCUGGUUAUGUAUAAUCUUGACACCAACCCAUUGACAAAUCAACACAUCACUACCUACUUUCCCUUUCGGAUUCAUCAGCCGUCACUUACACAUGUAUGCCUUUCAUCCAAAAAAAAAAAGAUAUUUCCUCCGUAAAAAAAAUCAAACCACUUUCCAUUUAAAAUCUAUUCAAAAUAAGUAACAAUUUUAUAAUAUUAUAUUUAUCUUAUUAGUCACCAAUCAUUCAAUUGUUUUUUACCCUUAUAACCUUGUUCACAAACAGCCCUUAUUUAAUUUAGGCCAUAUAAGUGAUAUUUUUUCUGUGACGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
28.25%
ME_num:
MEP:
30.89%
HE_num:
HEP:
40.65%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.91
Avg Expression:
33.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.99900465383242 | 0.0145055298817845 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.79072822134569 | 0.0267151860051225 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.33689820009383 | 0.0214130199240309 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.17822454708668 | 2.67758889500421e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.04521625232644 | 0.0176032878387811 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.91861580592463 | 1.7095509446541e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.07105419567936 | 9.49578879028918e-07 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.08582338025493 | 5.47274042725031e-07 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.77378812495709 | 5.67839925678346e-05 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.19248712488698 | 1.41911754517993e-11 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.99938275643247 | 2.53399886126759e-06 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.64911782154854 | 0.0373890368619054 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.08374875132014 | 0.0320788097450698 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.29839841716053 | 2.64214246727082e-05 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.33756920724763 | 0.000333439412017479 |
| 16 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.09687715029732 | 1.73297387327869e-56 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.9755011989922 | 0.0172376027383078 |
| 18 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.30533096628432 | 0.00130311735465273 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.03925733253125 | 0.00281807971199713 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 2.09695851370636 | 0.0236526867118452 |