Chr:
Chr4
Start:
13585891
End:
13590567
Strand:
+
Ref_name:
OSA-LNCN4452
Sequence
(OSA-LNCN4452.1):
GUGCGUGGAACAGUUGGGCCCUUCCCAAUUUCCAUUCACCCUUUCGCCGCGGCGGCAGCGGCCGGCAGCCGAGCCGCGAUCGAAAGCACCACCACGAUGAUGGCCGCAGCGAGAACGGCGUUCGUCUCCGGCGACCUACUUCCACUCAACGUCUCCUCCUCGGCGUCAAUCCCCACCCUGGCAAAAACCCAAGGUUUGGGAGAGGGUCCUAGGGAGGCUGAACUGCAAUGAAAUUGACCUGACACAUGAUGAAAAUGAAUCGCUGUUGAACUGGUGGAUUAGGAGAACAUCUCAAGGUGGGAAGGAAAAAGCUAAGGCAAAAAAAUCAAUCCACAUGUUGGUAGCAUGGGAAAUAUGGUGUGAUCGGAACAUAAGAGUAUUUCAAAAUCAAGAAAAAACCCUGCAGCAGCUACUAGACAAGAUUCAUGAUGAAGUCAAGCUAUGGAGAAUAUGUGGAGCAACAAACAUUGCGAGAUUAUCGGCCUAAGACCUUUUGAUUGAUUAGUGUUUUUCUUGUUUCUUUUUAUUUCUUCUUUUAUUUUUCUUUUCUUUUAUUUUUCUUUUUCCUUUUCUCCUUCACCGUUUGGUGAUCAUGUAAAUAGUUUCUCCCCUACUUAAUAUAACACCAACAAUGCUGGCUCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.11%
ME_num:
MEP:
42.07%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.73
Avg Expression:
3.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.90070067934098 | 0.0150291213195636 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.55652711393773 | 0.0317445142466346 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.8628596078886 | 0.0109073930697187 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.79217350920278 | 0.0129864178759153 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.560663867662 | 0.0342822032079687 |