Chr:
Chr4
Start:
12854868
End:
12859567
Strand:
+
Ref_name:
OSA-LNCN4411
Sequence
(OSA-LNCN4411.1):
GCCUGAGCCAGCCGUGCCGUGCACAGUGCCGCCGCAUCCUCCUUCCAAAUCUCGCCUCCCCGUUGCUCCUUUUUCCAAUUUAGUUGAGGGGAAAUAUUCCUCUUAUCCUCCUCUAUCUUUACCCCAAAAAUCGGAGCUAAUCGUUGAGUAUCUUAUCCGAAUCGAACUCGUUUUCGAGUUUAUCUCCAAAACCGAGUUUUUGAUUUCCCGGAUCGAUUUCUUGCGGGAGGAGUCCAAUCUCUUCAAUCCAAGGCUAUAAAUAGGACCCCCUAGUCCUCCUCUUUCGUUUGCCCCUCUCCCGUGGUCUCCCGUGCCCCGUAUCCUCUCCGCCGCCGCCGCCAAGUUCGCCGCCGCCGCCGGCCGAACUUCGGCCGUGUCGCGCCGUCGCCUCCGCCGUUGCCGUCGGUCUCCGUCACCGCCGUAAGGUGCGCCGAGGUGUGGGCAAGCUCGGCCGCUCCCUCCCCGCUGUCGCCGGUCACCGGAGCCCCGUCGCCGCCGUCGACCGAAGCCGCGCCGCGGCUAGACCUCGUCGCCGGCCGUCGUCGUUCGUCGUUUGGUUCGAGGAUGCUGCAGCUUCGGAAGAUCCGCUCUUCGUGGAGGUUGAAGCCGACGUUUGGGAAAGUGAGCAAGAAGAGGAGUUCCUGGAAGAUGAAGGCGUUGGUGUUUAGCUCGUGCCUGCCGUCAAGCGCCUGUGGUCGUCGCCCUAGUCUUCCGCUGUUUCCCGUUUGUCUUUGUGUGUGCUGGGCCUUCGCCGCCCAUGUAAUAAAUUAAUUAUUUACGCUUCCGCUUGGUAAACUCUGAAAUGUAUCAACUUUUGGUGUACCUUGCCUCCUGGGACAAGAAAUAAUACACGCACGUAAGGAACGCCCGUUGGGUUACUUCCGGUCGUGACACUCAAGAUGCCCAAGCCAUUGAAGAAGUCGAACAAAUUAGGCAAAGAGCUAUUUCGGCUAUCCAGCAGUACUUGUCUCAAUAACUUUUGUGUAAUAGGACUUAAAAAUUCUUGUAAUCGGCUAAGAUACGUUAAUACCCUGUUGUUUUAACAAUCCUUUGUGCCGAUUAACAUAACUUCUAAUUUUCACUUUCAUUUUUGGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.88%
ME_num:
MEP:
44.11%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.86
Avg Expression:
2.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.49962191674861 | 0.00180689253893687 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.94118556521894 | 0.0162115727785167 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.60446885201493 | 0.0271267386124942 |
| 4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.47549196144282 | 0.000337817291437467 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.25790275678789 | 4.26724195091313e-05 |