Chr:
Chr4
Start:
12836590
End:
12837388
Strand:
.
Ref_name:
OSA-LNCN4406
Sequence
(OSA-LNCN4406.1):
CUCGUAUCAUAAAUGCGAGUGGUAAUGGCGGCGUAUGAGGAAAUAGCAGCGCCGACGCUGGAGGGAGGGAGCGGCGGCAGCACGACGUGGUGGGAGGGAGCAGCAGCGGCGACGGGAUGGGAUCUGCGCCGGCGGGGAGGGAGGGGAUCCGCACCAGCUGAGCGGCGGCAGUGCCGGGGCGCGGAGGGAUUUGUGGCGGCGGCGGCGGCACACGCGCGAAGCAGCUGCUUCAUGCAGUCGAUGGCCACGGCGGCUUAGCUGUUCCAGGCGACGGAGUAAUGUCCCGACACCGGCGACCAUGCAAGCCAAGCUCCUCCACCUGCUCUCCAUCCAUGCGGCGACUGUGCUGGUGCCGACGGUGGCCUCUCUUCCUCGCAUUGGCGACGGUGCAUCAGCGGCGAGCCAGUGACGAUGAGAUUUGAGGAGGUGGUGACAGGAACGGUGUCGGCACCCCUGCGCCUCUAUGGCCAGUGGCUUCCACCUCUCCGGGCAUCGGCCGGCGGUGGUGCGACGCACUCCAGGGCCGCAGGCUAGCUAGCUCUUAGUUUUUUCUUCAGUAUAUGUAAUUUGUGAUGGAUAAUAUAUGCUGCCAAAAUUUAGUUAAACUUCAGUUGUAGUUUUAUCGAUUCUUCGUCAAAUUUUUGUGUCACAAAUAUGUUAAAAUGUUAUUUUUAAACAACUAAGUGUAUGAAAUUAGACCGAAUAGAAAACAAAUCACGGUCAAAUACGCAAGGGCAUAAAUGUCUUUUUAGCCAUAAGUUAACACUGUUACGUUGGAUUGACAGAAUAGGGUCAGGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
60.37%
ME_num:
MEP:
33.54%
HE_num:
HEP:
5.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.82
Avg Expression:
3.06
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.64455491464249 | 0.0380124655595241 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.75693572447528 | 0.00177694305986387 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.31338951726506 | 0.00768048778158964 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.64454944260467 | 0.0420895381066754 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -2.18547814110129 | 0.0182383305509838 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.53809472323412 | 0.0204333259711753 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -2.31934223525341 | 0.0111531376619412 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -2.07853328985821 | 0.00839018380851368 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.48717015115972 | 2.06241046144955e-06 |