Chr:
Chr4
Start:
12213662
End:
12216457
Strand:
-
Ref_name:
OSA-LNCN4395
Sequence
(OSA-LNCN4395.1):
GUAUUGUUUCUGACCCAUGAUAUGGAGUCAGGGAAAGCUGCGAAGCCGAAGGAACUCGGUAGUAAAAUGUAGGUCUAAAAAGCUGGAUUACAUCUGUAUAUGUCAAUGGGGACAUCUCUUCGAUUCUCGCCAAUUCAGUUCGAUUUUAUGUCGUAUCUGUCUACCAUGCAGCAAUUCCUUUGUUUGCUUCAUUUGUGUAGCUAAGCUAGAGAACUGUGUGAAGUUUCACUGGGAAGUUGAUACCUCUUCUGCUGCAACUAGCAGGCCCGGACACAAUCUGUAAUCUGUUCGUGCCAAAGCGUUGAAAAAAGUCCAGUGCGGCAAAAAGCAUUUUGUUGGCUCCUCGCACCAAUGUGUAGCCCUACGUAUUCUUUACAACAUUUUGCGUUGUAAUUGCAUGGUGCUAAUAUUCUGCGAAUGUUUUCUGUGCUAUUUUUUCAAACGCAUGUGGUCACAACAUGUGCAACAAGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.2%
ME_num:
MEP:
44.51%
HE_num:
HEP:
30.08%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.69
Avg Expression:
11.27
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.16461477391123 | 0.0337737046811477 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.57229196039616 | 0.0120683199027679 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.3819398408879 | 0.0262404634203863 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.10507973223555 | 0.0397903266019239 |