RiceNCexp:Browse

OSA-LNCN4389

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr4

Start:

11683290

End:

11684092

Strand:

Ref_name:

OSA-LNCN4389

Sequence
(OSA-LNCN4389.1):

AAAUGAGGUAUCCUCUCCAAAGUGUAAUAAGUAAUAACUGAACGGUAACAAGGCCAUAUAAGUCACUUCCUAAAUUCACGCACAAGACUAAGAUGACUUAUAUUUAGAGUAACAUAUAGUAGUACAGCAAAAGCACGAAAACAAUUGGUUAGUACAUUUUAGUACAACUCUAGUAUAAAUCAACAAAACACAAAUGUACCGAUGAACUCAAGAGGGGAACAGAUGGUAGCACCUUUUGAAAGUGGUGACAGAAUAUAGCGGUCGGUUACCUCAUACAUGAUACAUAGACAUUAGGGACAUUAUUGCAAGGCUGAGAAUAAUGCUUUCCCUGCAUAUUUGCUCAAUUAUAAUUACCAUAGCCGCAAAGAUAGUACACGAAUACGAUAACUUGAGCACCGGCAACACCAAUUGAAUAUUGAAUAUGACUAAAAUAAAGUAAUUCACCAUCAAUAUCCUGAAUUCAUUCUUUGUGUUAUCGGAGUUCGCCUACUAAACUGUACAACUAUGGGGAAACCACUUCUACUAAAAAUAUUGGGAGUGUUUUGAUUAUUUUCCUUUUGCAUUGCCUCUCAUUUAGGUCAACGCAGUCAAGAAACAUGACACGGCCAAGAAAUCCCCAAAUACAUUUCUUGAACAAAAUUAUCGUUGGCUCAUCGCGUCCAGUUAAUUCUCUAAAUUUG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

103

LEP:

20.93%

ME_num:

363

MEP:

73.78%

HE_num:

HEP:

5.08%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

embryo

Tau :

0.71

Avg Expression:

3.91

Tip: OSA-LNCN4389 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	1.64000919533867	0.000256037912985436
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	1.31811001776216	0.00192664796911578
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	2.00086541967138	3.73618779196336e-08
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	1.66268241003367	0.000169702646109489
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	1.20016180315739	0.0159878002246109
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	1.36119604410281	0.000763631949979403
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA	1.14619891754142	0.0241185130937786
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	1.01631716150949	0.0212495835208555
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	1.55113764378758	3.44718914849182e-05
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	1.52372233906744	0.000504620191653562
11	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	1.24549052935438	0.00138227231401521