Chr:
Chr4
Start:
11290193
End:
11291273
Strand:
+
Ref_name:
OSA-LNCN4373
Sequence
(OSA-LNCN4373.1):
GAGAAUAGAAAGGAAAACAUUUAAUAAAUAAACUAGCCUAGAUCCCAUGCGUUGCAACGGAAAACAAAUUGAGUUUCUAGCUUAUUAAAUCAAUUAACAAGAACUUAUUUAGUUCAAGUAAUACUAUGAUUUUUCUUAUUGAACAAGUAGGUGAUUUUGAAAUUUAGGGGAGACGAUAAUGAAAUAGGGGAAUAAUAUAGAUUGUGGGGCCCAUAUGUCAGUGGUAAGGGGUAUGGGAAUGGAUAUCACCACUAGUAACACUUUUUAUAGAUAUUGUAAUAUCAUGGUCUACGAUACACGGAUACGGCCAUCUUAGUCGCGUAUUUGUGUCGGACACGCGAAUGGACACGGAUACGUGUCUGACACGCCCGGAUACGUGUCAAGUACGUAUCAGGCAUUUCCAUGACUUUCAGAUAAAUAAAUUAAUUCUGGAUAUGUCUUCGAUACGAUCUUGACACUUGCCCGAUACGUUCGAACCCUCAAACCGCGUGGGGCCGUGUGGGGUAUCGACCCAGCCCAUCUGGUUUGUCGCCUCCAUCUGUUCCCGACGCGCCUCACGCGAGUCACGAGCUCCAGCGCUGUCAUCAUUGGCUCACGGCCAGAAAAUGCCGUAUCCCCGUGUCGCCGUAUCGCGUAUACGUGUCCGUAUCCCCGUAUCUGGGUAACAUAGAUCAUGGUAUGUGUUUAAGGUGUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
41.67%
ME_num:
MEP:
54.27%
HE_num:
HEP:
3.86%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.84
Avg Expression:
4.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.14329874522743 | 0.0244774965145252 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.82321143857451 | 9.65135998603894e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.43069909363523 | 0.000310943650858696 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.21132494020607 | 0.00171583350872608 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 2.87449700389236 | 0.0342386822525276 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.55192294536486 | 0.0445381732796111 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.84453892454864 | 0.0151632421101212 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.82458011004664 | 0.00895088026969909 |