Chr:
Chr4
Start:
9886541
End:
9891883
Strand:
+
Ref_name:
OSA-LNCN4365
Sequence
(OSA-LNCN4365.1):
AAAAAAAUCUGGUGCAGACCGGAUGCAAACAGCAGUCCGUGCAGCCCCGACGCGGAUGCAUGACGCGUGGAUGGGGCGCUCAUCCGACGGCCGGCCCGCACAAGCGAGUCCGCAUCGCACCUCAAUCUCAGCUCAGCUCAAGAGCGAUCUCAACACACCACAACUCGGCUCGCGCUCGCUCCGAUCGGCUCGAUCUAGUCCGAGAUGCAGUCAUCGUUCCCCUCCGCCUGUUUCUUAUCCCGUCGCCCCUUUCUCAUCCGCUGUUGGGCGCGUGGAGACGGAAUGCGGCGGCGGCUCCCUCGGACAGCUAGGGCAGUGGUGGCGCCCUCCCGUGCCUAGAGCAGGGCAGUGGCGGUGCCCUCCCAUGCCUGGAGCAGGGUAGCGACGGUGGAAGGGCCAGGCGGCACCCUCCCGUGCAUUGGGAGUUUCAUAGUUUGAUUGCUCGGUUUUGGUUUUCAUUGCGGUAGUUAAUCAUGGUCACUAGAUUCUGGUUUGAUUGCUCAGUUUUGGUUUUCAUGUGAUUAGGUAGUAAGCCUAGCAUCUAUCAUUGCAGCUUGAUAGUGUUAAUUAGUACUAGUUUGAGACAAUCGGUUUUUGUUUUGCAUAAACAAAACAUACAUUCUGUCUUGGCAACUCGCUCGGUGCCUGGCCGACCAAUCAUCAUAUCAGUAAAAUUGUUGGACAUUUUGCAAAGUGGGGUAGUAGGCUCACAUCAAAAUUGACUAGGAAUAGGUCACCAGAAAACAGGCAAAAAUCUGAAACUUGAGUAUCACACUGAAUAAAUUGCAUAGUGGAGGAGUAAGAUAUGUUGCAUGUUGUAUAUUCAGCUGUGACACUUCCACUGAAAAUAGUUGAAACAACUAGAGAAACAUAAGGCUUUGGCUUCCCCCUGACAAAUCUGAACUGAACCACCUGGUGGCUUCUCUUUUUCUGUCACUACAAGACAGAGCCAAAUCUGAACUGAACCACAUUUGGUUUCUCUCUUUUUUCUUUUAUAUGCACUACAUGGCAGCACAAUCAGUUGCAAAAAUCAGAUAUUUGUUCUUGGCACACUUGGCAGCUGGCAACUUGAGGCCAAUGCAGAAUUGCAGGUGAGAUAUAUGGGGUGCGGCAUGAAUGGCAAUUGAAGAUUGGAAGAGCAUGAACGAGAGGAUGCUGAAGAAGUGACAUAGAACAAUCAAUGACAAGAUAAUGAAUGUAGCCUUUCUUUGUAAUUCCUACUAUGUAGUAUAUACACUAUUAGGAGUUUGUAAAGAUUCAGAACACCUUGUAUCCUGAGAACUAGUUUUGCCAGAUGUCAAGUUAUCCUGAGAACUAUUGUAACCUUGUGCAAAAUACAAAAGAGGAAAAUUGAUUGCCUAAAAGGAUUGUAAAUGCAGCAGGCAGAAGUGGAUGGUGCUAAAAGGAUUGUAGUUUGAUGAAUGUAGCCUUCGCUGUUAAUCCAUACAAUGUAGUCUGUACACUCUUAGGAGUAUGCAAGGAUUGUAGUCCAGAUGCUGUAAGUUUGGACCGCAUUUUUGGUCAAAUUGCAAGGAAACUCAGAUCGCUAUGUAAUCUGUACAAUGUAUUUCUUUUAUUUGAAAUACAUAUGGCAUGUUGGAUGUUCUGAAAUCUGCAAUGUGAUUGAUGCAUUGAAAAUUUUGAUUAUUCAUCUGAUUCCUUUCAAAAAUAAAAUGAAAUAUUGUGUGAUCUGAAAUCCUGAAGUUCAAAUCUAGAAUGUGAUGUCUAGAAGCUGGUCUUUCAGAAACAAUGUAGAUAAUUCAUAUCUCAUACAUAGCUACCAAAUUCAUGGAUAGAACUGACAGCGUCAAUGAUAGUUUAGUGUAACAC
Sequence
(OSA-LNCN4365.2):
AAAAAAAUCUGGUGCAGACCGGAUGCAAACAGCAGUCCGUGCAGCCCCGACGCGGAUGCAUGACGCGUGGAUGGGGCGCUCAUCCGACGGCCGGCCCGCACAAGCGAGUCCGCAUCGCACCUCAAUCUCAGCUCAGCUCAAGAGCGAUCUCAACACACCACAACUCGGCUCGCGCUCGCUCCGAUCGGCUCGAUCUAGUCCGAGAUGCAGUCAUCGUUCCCCUCCGCCUGUUUCUUAUCCCGUCGCCCCUUUCUCAUCCGCUGUUGGGCGCGUGGAGACGGAAUGCGGCGGCGGCUCCCUCGGACAGCUAGGGCAGUGGUGGCGCCCUCCCGUGCCUAGAGCAGGGCAGUGGCGGUGCCCUCCCAUGCCUGGAGCAGGGUAGCGACGGUGGAAGGGCCAGGCGGCACCCUCCCGUGCAUUGGGAGUUUCAUAGUUUGAUUGCUCGGUUUUGGUUUUCAUUGCGGUAGCCAAUGCAGAAUUGCAGGUGAGAUAUAUGGGGUGCGGCAUGAAUGGCAAUUGAAGAUUGGAAGAGCAUGAACGAGAGGAUGCUGAAGAAGUGACAUAGAACAAUCAAUGACAAGAUAAUGAAUGUAGCCUUUCUUUGUAAUUCCUACUAUGUAGUAUAUACACUAUUAGGAGUUUGUAAAGAUUCAGAACACCUUGUAUCCUGAGAACUAGUUUUGCCAGAUGUCAAGUUAUCCUGAGAACUAUUGUAACCUUGUGCAAAAUACAAAAGAGGAAAAUUGAUUGCCUAAAAGGAUUGUAAAUGCAGCAGGCAGAAGUGGAUGGUGCUAAAAGGAUUGUAGUUUGAUGAAUGUAGCCUUCGCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.33%
ME_num:
MEP:
3.66%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.96
Avg Expression:
1.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.96598681953768 | 9.42301763365934e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.63986483655222 | 1.91109087803115e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.68741103110284 | 4.28201262105773e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.67688941447818 | 5.25311947065071e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.92979806272351 | 1.26034475699572e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.19990521858755 | 1.63158615457517e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.30983614186339 | 0.0246241315777262 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.83457229094896 | 1.72263535917131e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -7.75999737994793 | 3.90262663624738e-09 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -3.54724875112755 | 2.32295069389274e-06 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.50036230148308 | 7.02209772029587e-07 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.48717898659796 | 1.43297762888533e-08 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.52142482050994 | 4.16691294305821e-06 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.22584013815699 | 5.28244322284896e-08 |