Chr:
Chr4
Start:
9409049
End:
9409319
Strand:
.
Ref_name:
OSA-LNCN4338
Sequence
(OSA-LNCN4338.1):
CUCUAAAAUGCUUGAUUUGUGCACAAUGGAUAGGUACUGGUAUAAUAUGAAUUUAGGUGAAAGAAUUUCUAUUUUAUCUCUUUUUAUUUGAGAGUUAUGAAUUUUAGAAGUUUGCUCGGUAUAGGGUAGUAUUUAUUUAGGUACUAUUGUGAAAUGCUGUUGUAAGGUGAUUCUUAUUAAGUUUAUGUUUGCUGAGGUGAAGAUAUGUGUUUUCUAAGACUAACACAUUUGGUUUCAUAAUUUAGAGUUAAUAUGAAUUCUUUAUGUAUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
96.34%
ME_num:
MEP:
2.44%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.98
Avg Expression:
1.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -6.25785228225656 | 2.16742945154171e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -6.35924551582395 | 1.04403123226595e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.5090103319071 | 5.29345793026385e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.503787188016 | 0.000491073539967622 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.75395255013053 | 0.000124976742841678 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.9207678126245 | 7.7929438438802e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.9607315487462 | 0.00618525355142342 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.65905289849727 | 6.66532971563881e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.59186631886709 | 0.00673061323465816 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.32219726397529 | 8.04213818194884e-06 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -6.79956887199969 | 1.39004539781335e-06 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -6.21305196864478 | 2.40231465025818e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.93904894048889 | 5.01460753385024e-07 |