Chr:
Chr4
Start:
8322670
End:
8327467
Strand:
+
Ref_name:
OSA-LNCN4331
Sequence
(OSA-LNCN4331.1):
CACUCCCGCCCUCAUCCGGAGUUCCCCGACCUCCCCACCAUCGUCGUCAUCGCAGGCCUGUUUUUGAUUUUUUUUACAGCAGAUGGUGGAGAGGGAGGGUGUAGCCGUGGAGUGAGGGUGGAGAGGGAGAGGCAUACCAGAUCUGGAAGGAGAGCGCCGCCAGCGGCAGCCCUACAACCUCCGCGUGCACGUUUGCGCCUGCCACCGUCGCCCUGCGCACGGCCGCCGCCUGCCUCCGUCACCCUGCGCCCACCCGCCGCCGCCGCCUUCGCCCAUCCGCGGCCGCCGCUUGCCUCCUCCACACCCAUCCGCGCUCUUCGUCCGAUCGCCCGCCGCCGCCCCUUACCCGGCUGCCCGCCAGCCACCUGCACCCAUCUGCGCGCUGCCGGCCAGCCGCCCCAUAUCCCUUGCAGAAAAGAGUAGAGAAGAGUAGAGACUAGAGAAGAGCGGAGAAAAGAUAAUAGAUUCCGUCGUUUCCGGAGAGUCCGUUUUAGCAGGAGAAGAUUUUGAAGAGUUCCAAGGCCAGCAAGAGGAAGAGUUCUACAAUGAGGCUGAUGGUGGGGAGGAUUAGGUGUAGCCCUGGUCAAGCUGCCUGUGGAGUGGAGCCGUCUGCGCCGUUUAUUUUAUUUUUCCGCUGCUUAGAUCUUUAUUGAUUGAGAGGAACUAUCUACCUCUGUAAUGACAUUAUAUUCGC
Sequence
(OSA-LNCN4331.2):
CAUCGUCGUCAUCGCAGGCCUGUUUUUGAUUUUUUUUACAGCAGAUGGUGGAGAGGGAGGGUGUAGCCGUGGAGUGAGGGUGGAGAGGGAGAGGCAUACCAGAUCUGGAAGGAGAGCGCCGCCAGCGGCAGCCCUACAACCUCCGCGUGCACGUUUGCGCCUGCCACCGUCGCCCUGCGCACGGCCGCCGCCUGCCUCCGUCACCCUGCGCCCACCCGCCGCCGCCGCCUUCGCCCAUCCGCGGCCGCCGCUUGCCUCCUCCACACCCAUCCGCGCUCUUCGUCCGAUCGCCCGCCGCCGCCCCUUACCCGGCUGCCCGCCAGCCACCUGCACCCAUCUGCGCGCUGCCGGCCAGCCGCCCCAUAUCCCUUGCAGAAAAGAGUAGAGAAGAGUAGAGACUAGAGAAGAGCGGAGAAAAGAUAAUAGGUAAAUUUAUGGACAGCUAUGUUGAUUUGUUGGGUUAGCUGGAAGAUGUUAUUAAAAUAUAGAUGGGUGUGAUAUAUAUGAUGUAAUAUGGAUGAUCUGUUGGAGUGGGAAGGGAUAUGAAUGAGAAAUCUUUUUUGGAUGACUAUCCAUAUAAACAUGUGGAGGAUCAAAUAUGGAUGAGCUCCUGGGAAUGCUCUUAGAGUAGGUUUAAUAGGAGUGCUAGCUGUUAGCUGCAUUAGGGGUAGUUUGGAUACAGUAACUAAACAUGCUACAUCCGAUAUUGGAACACUAAUUUGGAGUAUUAAACAUAGACUAAUUACUCAGAUGGAGGCUAAUUUGCGAGACGAAUCUAUUAAGCCUAAUUAAUCCUUGAUUAUCACAUAUUUACUGUAGCACUAUAUUGUCAAAUCAUGGACUAAUUAGUAUUAGUAGAUUUGUCUUGCCAAUUAGCCUCUACUCCCCCGGUUUCAUUGUAAUUGACGUUUUGGACAAUGACACGUUUUACAAAAUAUAUCUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.31%
ME_num:
MEP:
4.07%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.97
Avg Expression:
11.13
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.73088712176558 | 0.0175092450078131 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.98102571615166 | 0.00921135068216123 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.22511312905756 | 0.0403985138921669 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.13534054066357 | 0.0235428555650498 |
| 5 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 3.08591017759267 | 4.47537470942597e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.83494143017932 | 0.0340480549596072 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.27305201369698 | 0.00497152132155233 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.68721604513934 | 0.0184560377901799 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.41405010268272 | 0.00278048690514216 |