Chr:
Chr4
Start:
8283901
End:
8284300
Strand:
+
Ref_name:
OSA-LNCN4330
Sequence
(OSA-LNCN4330.1):
UUCAAAAGGAAACUCCACACUGCUUUUCACGUUUGAAUAGCUCAGGAAACAAACAUUUGGCAAAGCAAAAAAAUUGGACAAUGUUUUGGAGUUAAUACAUUUCAAAUUUGUAAAUCAUACAUUUGAAGGGGAUGAUUAUAGUUAUUGAAUGGUAGAAGUUAGUUGGCAUGCCUCUGUUAGGUUCACAGGUCUUGCUAGCUGUAAACUUGUUCUAAAGAAUGACAAGUUUAAACAGGGUUUACUAUGACUUAUGUAAACAUGCCCAGGGAAAAAAAGGGAAAACAAAGAAUUGCAUAAUUGUUUAGAGUGAAUUAAACAAAAGACUACAUUUGUUCAUUUUAACUUUUGCAUUAAUAAGAACUAAGAAGUGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
42.48%
ME_num:
MEP:
56.3%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.72
Avg Expression:
2.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.61512734901127 | 0.0227161170839593 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.63306520803198 | 0.0312029821201201 |