Chr:
Chr4
Start:
8246150
End:
8247709
Strand:
+
Ref_name:
OSA-LNCN4329
Sequence
(OSA-LNCN4329.1):
UGCUAAUGGAUCGCUCCGUUUUCCAUGCGGAGGCAGUAUGUUCCCAUCAUCCACAUGCGAACAUACUUUAAACACUUCAAACCACUUCCAUAUCAAUAGAAAGCAUAUUGAAAUAUGUUUCAGGGUAUAGUAAAUGUUAGUAGGUUUUAAAAGUUUGAAGGUGAAAACCACUGGAACCUUGAUCAAACCACGUUAACGUUGAUCAACGUUGAAAUAUGUUUUAUGGUGUCAUGUGCUUUUGUUUCUUAAAAGUUGAAAGCGAGAGAGAACUGGUUUUGUAACUUAGGAUGAAAAAAUAGAUUUCGAAGGAAGUUACGGCUUUUACUUUUUUCUUAAGGAAAGUAGCUGCAUCAAUUACUAUUACCACUUAAUUUCUUUAAUUAACUUGUCUCAAAAUGUAACAACUUUUAGCAAUGAAUCUGGAUUAGCUAAAAAUGCUUAUAUUUUGGCCAGAUUCAUAACUAAAAAUGCUUAUAUUUUGGGAUGGAGGGAGUACGUUUGAUGGCCUAUAUACCUAGGGGAUAUAUUUGUUGAAGCUUUAGGUUAUUUCAUUUUCUAUAUUGCGGUUUCACUAGUAGGAUAUAUAAUAGUGCCAAACUGCCGUAAAAACCAUAUAAGUACAUGUCAACUUUCUUAUGUAUCGCACUGAUGGUUUCUAACCUAAUAAAACGAUAACAACGAGACAAGAUCACUACUAGGAAAAAGAUUUUUUCCAGGCGGUCCAAAACAGUUUUCGCAGGCGGGGCUUCACCCUCCGGCCACGGCUCUCCUCCAUCCACUGCUCCCACAUAGGAGAGGGAGGAGCCGAGCCGCUGCAUAAGUGCCGUCGUCAUCGUCGUUGCAUCGACGAGGAGAGCCGGCGGCCGGAUGCGAGCCGUCGUCGUCGCCCGUCGUGGCCGGUGGCGUAGGCGGUGAGGAGGGAAGCGGGCGGCAGAGGAGGCGAGCCAUUGUCGUCGCUCGUCGUGGCCGGCAGCGGAGGGGGCGAGGAGGAGAAGCGGACGGCGGAGGCGGCGAGGAGGGAUGCCAGCGGCGGCGGGGGAGAGCCGUUGUCGUCGCUCGUCAUGGCCGGCGACGGAGGGGGCGAGGAGGGAAGCUAGCGGAGGAGGAGAGCCGUUGUCGUCGCUCGGCGUGGCCGGCGGCGGAAGGAGCCGUCGGCGCGCGGAGGCGGCAUCGUGAUCGUCGUCAUCGUCGAGAAGGGAGCCCGCCGGUGGCGAGGAGGGAGCCGACGGUGGAGGCGGGGAGGAGGGAGGCUGCUGGGAGGAUUUUUUUCUGAGUGAGAGAGAGAGGAGGGGGAGGGAAAUGAGUGGUGGAGAGGAGAGGAUAAGGAUGACUAGAUUUUUUAUGGGUAGGUACGAUUUUUGCAGGCGGAUCAUAUAAGUUGCGCUUAUGAAAAUAGAUUUUCGCAGGCGCCGCUUAAGUGGUCCAACUUUACCCCGAUUUAUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.15%
ME_num:
MEP:
34.55%
HE_num:
HEP:
6.1%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.90
Avg Expression:
5.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 5.13678031485439 | 0.000335388412782525 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.48631354367579 | 0.00833173000283113 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | 1.58820293332908 | 0.000681780210048648 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 1.47457475180895 | 0.00572606122209452 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.3279360885841 | 0.0259414895853966 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.415885268778 | 1.10447335220414e-08 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.21922147044382 | 9.20842352209223e-05 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.88143969557452 | 7.32011039281538e-21 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.67437295020748 | 1.09505952596855e-10 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.08910001494512 | 4.14205502877907e-22 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.66615540398363 | 0.00178349602850991 |
| 12 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.62002305397314 | 0.00206726447761846 |
| 13 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 6.80108316710344 | 0.014429854577605 |
| 14 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 6.95120842700761 | 0.00460431380908328 |
| 15 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 5.13683682215708 | 0.000334336942798872 |
| 16 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 5.13668166500365 | 0.000335558644677067 |
| 17 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 5.51412076075271 | 0.000738539675458753 |
| 18 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.31801521051682 | 0.00186409612348609 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.83801369896168 | 0.000305315579151068 |
| 20 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 5.45447670316535 | 0.000412137776288327 |