OSA-LNCN4326


Function Link


Basic Info

Chr:

Chr4

Start:

9329362

End:

9332044

Strand:

-

Ref_name:

OSA-LNCN4326

Sequence
(OSA-LNCN4326.1):

GGAGUGUGUACAGUGACAAAAAGUGUUGUUUGGUUUAGACAACUAAUCUGCUAAAAAAAUUAUUUACCACGAACGUCUCAAGCACCCGUGUCAAAUCAAAGAUUUAAAUCAAGAUUGACUGGUUCCACCACAAGAAACUUAUCCGGUUAAACUAUACCCACUUUGCAAUUGUGGGAAUAUACAUGUGUAUUGUUACCUGAGAAAAAUAUGUGGACUUCAACAAAUCGUAAAAAUCAAUCUUAUUAAUUUUGUGAGAGUGAGUAUUGGCUUUUAUUUACAAAUUGUAUUUGAGGUCAAAUAUUAAUAAGUAGACAUUAAAAAAAUGAAAGAAGAUUAGACGGUGAGGGGAAAAAAUAAAAAAAUAAAAAAAAAGAGCGAACAAGGACAGGUCAAGAAAAUUUUAUUAUUUAAACAUUUUUAAUAAAUAGAUGCUCGUGUUACGUGUGUUGCAACGGGUAAACUAAAAUUAUAAUAAAUAUAAAAAUAUUAGAUCGUUAGGAUUUAGUUUUUAUGAUAUGAGCCCUUUAAAAAAAUAUAUUCCUUACAUAAAAAAAAGUUGUAAAAGAAAGGCCCAUUAGACUUAAAACCAAACAAAAAUUAAAACCAACCCUAUAAAUCUCUAUAUGUGCCGGUUAUAUGGUAUACUUGUGCUGUUUUUUUAUUCAAAUACAGAGUGCUCAUUUUUUUUUAAAAAAAAGGCCCGUCAGAUCUAAUCCUUAUCCCCGAGAGAGCAAGCGGAGAGCGAGCGGAGCAAGCGGCGCCUCGAUCCUUCCGUCUCCUCAUCUUCUCGUUUUUCCCGACUUCCCUUAUCCUCUCUCUCCUCCCUUCAUUUUCCUCUUUCUCGGUGUUCUCUCUACUGCCGUCGCAACCAGCGACGCCCUCCCCUCUCCCCUCACCAGUGCGCUGCUUCCCCUCCCCCUCGCACGGCGCCCUCCACCCGGCUGACGGCGCCCUCCUCCUCUCGGUCUUCUCUCUCGCUCUCCUCUCUCUCGGAGCCGAGGCGGCAGGCGGCGGCGCAAGAGGGGAGGCAGCGGGCGACGGGUGGCGGCGGCAGGUGGAGACGGUGAGGCCCAGCAGCAGCGGGAGGCGGUAUCGGAGGUGAUGGCCGCGUCCGCCCCUCUGCGGCAGCGGCGGGAGGAGCGGUGGCCGCCCAGAGGCGCCCUCCCACCGCUAGAUCCGGCGGGAGGAAGGGCUCCGGAGCUGCGCCGCCUCGCCAUCCUCCCCGCCGCCACCUAAUGCGUCGGUCGAUCCAGCGGUGGCGGCUCCCUCCGCCCCCUCUCGCCUUCCUCCGGCGGCAGUGGCAGCGUCGGCGGCAGCCGCGGGCGGAUCCGGCGGCGGCGGGCGGAUCCAACGGCGGAGGCUCCCUCCUCCGCCGCCUCUCUUCUCCCUCCGGCGGCGGUGGCGGCGGCUGCGACGGCCGCGGAUUGAUAGCGUGGCGACGGCUGAGGGCAGCAGUGGCGACGGCCGAGGUCGGAUCGGCCCCUCCGCUGCAGCGGCGGGAGGAGCGGUGGCCGCCCAGAGGCGCCCUCCCACCGCUAGAUCCGGCGGGAGGAAGGGCUCCGGAGCUGCGCCGCCUCGCCAUCCUCCCCGCCGCCACCUAAUGCGUCGGUCGAUCCAGCGGUGGCGGCUCCCUCCGCCCCCUCUCGCCUUCCUCCGGCGGCGGUGGCAGCGUCGGCGGCAGCCGCGGGCGGAUCCGGCGGCGGCGGGCGGAUCCAACGGCGGAGGCUCCCUCCUCCGCCGCCUCUCUUCUCCCUCCGGCGGCGGUGGCGGCGGCUGCGACGGCCGCGGAUUGAUAGCGUGGCGACGGCUGAGGGCAGCAGUGGCGACGGCCGAGGUCGGAUCCGGCGGAUUGUGAUGCAUAUUGUAGUUCUUCUUGGACAUUUAUUUUGUGAUUUUGUGAUGAUUGUGGUUGAGUGAUUUGGUUGUGCCGAUUUUGGGAAUUGUUUCUCUUGUAUCCGAUUCUGAGAGGGAUUGGGAUUUGGGGGCUGCGGGCGAAGGCGGACAGAAAAAAUCAACGAAAAAAAACCGGGCCAAAAAACCGUGAAAAAAACGGACGGCCCAAAAAACCGGACAAAAAACCGACGAAAAAAAAACCGGGGUAGAGAACCACGAAAAAACCGGACGGCAAAAAAAACCGCGUGUGCGUUCAGGAAACCACCGACGGACGAAAAAGCCUCACGGAAGCCUUACGAAUUUUUUUAUUAGGUAUAGAUUUAGAAAUUGAGCAUAGAGUCCUAGUGUGACUAGGAGUUAUUCUCCUACUUUGAGUAGGAGGUUUUCGGUAUAAAUAGAGAGGGAGCGUGAGACUUCCCUGUAUCGCUUUUCAGAGUGUGGAGUUGAUAGUUUAGUUAGGGUUUCGAGUUUAGUCGAGAUUUUUGUAAGGAGUGCUGUUGUUGCACUAUGUAAACAUAGAGAGAAGCAAUAAAGUUAUCAUGUACUUUGAGAGUUCUUCGAUUUGUGUUUUCUUGGGUUCAGGCGGUAGGGAGGCGAUCUAACCGGCAGCGUGCGAGCGGUCCGACUGGCGGCGACAGGACUACGUCGAGAUUUCCAUCAAUUUGAGGGUAACUUUUAUUUCCGCUAAAAGUUUUUGGGUUUUUGGUUUUCCCUACCAUUCACCCCCCUCUGGUAGGCUUGGUUACUUGUGUUCGAUCCUACAAGUGGUAUCAGAGCCUUGUUUUCUUCC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

341

LEP:

69.31%

ME_num:

78

MEP:

15.85%

HE_num:

72

HEP:

14.63%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root_elongation_zone

Tau :

0.77

Avg Expression:

7.93

Tip: OSA-LNCN4326 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB)2.474378676550050.00625651159191446
2IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA)2.415619405259620.0123611689097258
3Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated-8.847313548717470.012276570215663