Chr:
Chr4
Start:
9329362
End:
9332044
Strand:
-
Ref_name:
OSA-LNCN4326
Sequence
(OSA-LNCN4326.1):
GGAGUGUGUACAGUGACAAAAAGUGUUGUUUGGUUUAGACAACUAAUCUGCUAAAAAAAUUAUUUACCACGAACGUCUCAAGCACCCGUGUCAAAUCAAAGAUUUAAAUCAAGAUUGACUGGUUCCACCACAAGAAACUUAUCCGGUUAAACUAUACCCACUUUGCAAUUGUGGGAAUAUACAUGUGUAUUGUUACCUGAGAAAAAUAUGUGGACUUCAACAAAUCGUAAAAAUCAAUCUUAUUAAUUUUGUGAGAGUGAGUAUUGGCUUUUAUUUACAAAUUGUAUUUGAGGUCAAAUAUUAAUAAGUAGACAUUAAAAAAAUGAAAGAAGAUUAGACGGUGAGGGGAAAAAAUAAAAAAAUAAAAAAAAAGAGCGAACAAGGACAGGUCAAGAAAAUUUUAUUAUUUAAACAUUUUUAAUAAAUAGAUGCUCGUGUUACGUGUGUUGCAACGGGUAAACUAAAAUUAUAAUAAAUAUAAAAAUAUUAGAUCGUUAGGAUUUAGUUUUUAUGAUAUGAGCCCUUUAAAAAAAUAUAUUCCUUACAUAAAAAAAAGUUGUAAAAGAAAGGCCCAUUAGACUUAAAACCAAACAAAAAUUAAAACCAACCCUAUAAAUCUCUAUAUGUGCCGGUUAUAUGGUAUACUUGUGCUGUUUUUUUAUUCAAAUACAGAGUGCUCAUUUUUUUUUAAAAAAAAGGCCCGUCAGAUCUAAUCCUUAUCCCCGAGAGAGCAAGCGGAGAGCGAGCGGAGCAAGCGGCGCCUCGAUCCUUCCGUCUCCUCAUCUUCUCGUUUUUCCCGACUUCCCUUAUCCUCUCUCUCCUCCCUUCAUUUUCCUCUUUCUCGGUGUUCUCUCUACUGCCGUCGCAACCAGCGACGCCCUCCCCUCUCCCCUCACCAGUGCGCUGCUUCCCCUCCCCCUCGCACGGCGCCCUCCACCCGGCUGACGGCGCCCUCCUCCUCUCGGUCUUCUCUCUCGCUCUCCUCUCUCUCGGAGCCGAGGCGGCAGGCGGCGGCGCAAGAGGGGAGGCAGCGGGCGACGGGUGGCGGCGGCAGGUGGAGACGGUGAGGCCCAGCAGCAGCGGGAGGCGGUAUCGGAGGUGAUGGCCGCGUCCGCCCCUCUGCGGCAGCGGCGGGAGGAGCGGUGGCCGCCCAGAGGCGCCCUCCCACCGCUAGAUCCGGCGGGAGGAAGGGCUCCGGAGCUGCGCCGCCUCGCCAUCCUCCCCGCCGCCACCUAAUGCGUCGGUCGAUCCAGCGGUGGCGGCUCCCUCCGCCCCCUCUCGCCUUCCUCCGGCGGCAGUGGCAGCGUCGGCGGCAGCCGCGGGCGGAUCCGGCGGCGGCGGGCGGAUCCAACGGCGGAGGCUCCCUCCUCCGCCGCCUCUCUUCUCCCUCCGGCGGCGGUGGCGGCGGCUGCGACGGCCGCGGAUUGAUAGCGUGGCGACGGCUGAGGGCAGCAGUGGCGACGGCCGAGGUCGGAUCGGCCCCUCCGCUGCAGCGGCGGGAGGAGCGGUGGCCGCCCAGAGGCGCCCUCCCACCGCUAGAUCCGGCGGGAGGAAGGGCUCCGGAGCUGCGCCGCCUCGCCAUCCUCCCCGCCGCCACCUAAUGCGUCGGUCGAUCCAGCGGUGGCGGCUCCCUCCGCCCCCUCUCGCCUUCCUCCGGCGGCGGUGGCAGCGUCGGCGGCAGCCGCGGGCGGAUCCGGCGGCGGCGGGCGGAUCCAACGGCGGAGGCUCCCUCCUCCGCCGCCUCUCUUCUCCCUCCGGCGGCGGUGGCGGCGGCUGCGACGGCCGCGGAUUGAUAGCGUGGCGACGGCUGAGGGCAGCAGUGGCGACGGCCGAGGUCGGAUCCGGCGGAUUGUGAUGCAUAUUGUAGUUCUUCUUGGACAUUUAUUUUGUGAUUUUGUGAUGAUUGUGGUUGAGUGAUUUGGUUGUGCCGAUUUUGGGAAUUGUUUCUCUUGUAUCCGAUUCUGAGAGGGAUUGGGAUUUGGGGGCUGCGGGCGAAGGCGGACAGAAAAAAUCAACGAAAAAAAACCGGGCCAAAAAACCGUGAAAAAAACGGACGGCCCAAAAAACCGGACAAAAAACCGACGAAAAAAAAACCGGGGUAGAGAACCACGAAAAAACCGGACGGCAAAAAAAACCGCGUGUGCGUUCAGGAAACCACCGACGGACGAAAAAGCCUCACGGAAGCCUUACGAAUUUUUUUAUUAGGUAUAGAUUUAGAAAUUGAGCAUAGAGUCCUAGUGUGACUAGGAGUUAUUCUCCUACUUUGAGUAGGAGGUUUUCGGUAUAAAUAGAGAGGGAGCGUGAGACUUCCCUGUAUCGCUUUUCAGAGUGUGGAGUUGAUAGUUUAGUUAGGGUUUCGAGUUUAGUCGAGAUUUUUGUAAGGAGUGCUGUUGUUGCACUAUGUAAACAUAGAGAGAAGCAAUAAAGUUAUCAUGUACUUUGAGAGUUCUUCGAUUUGUGUUUUCUUGGGUUCAGGCGGUAGGGAGGCGAUCUAACCGGCAGCGUGCGAGCGGUCCGACUGGCGGCGACAGGACUACGUCGAGAUUUCCAUCAAUUUGAGGGUAACUUUUAUUUCCGCUAAAAGUUUUUGGGUUUUUGGUUUUCCCUACCAUUCACCCCCCUCUGGUAGGCUUGGUUACUUGUGUUCGAUCCUACAAGUGGUAUCAGAGCCUUGUUUUCUUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
69.31%
ME_num:
MEP:
15.85%
HE_num:
HEP:
14.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.77
Avg Expression:
7.93
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 2.47437867655005 | 0.00625651159191446 |
2 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 2.41561940525962 | 0.0123611689097258 |
3 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -8.84731354871747 | 0.012276570215663 |