OSA-LNCN4325


Function Link


Basic Info

Chr:

Chr4

Start:

9288750

End:

9290647

Strand:

-

Ref_name:

OSA-LNCN4325

Sequence
(OSA-LNCN4325.5):

ACAAAAUUUAAUGAAACUAAUUUGGUAAUGUAAAUGUUGUUAUUUUUUUCUAAAAAUUUGAUCAAACCUAAAGAACUUUGACUAAGAAAUAAGUCCAAUAACUAAUAAUAUAAAACAAAUAGAGUAGUUGUCAACGUUCUUUGCAUCUAUAUUUGUUCUUUAGUUCAGGUGUUGUUCCCUCUGUUCCCAACCACAACCGCUAGUCUAGUGAGAUGUUAGAGCAUCUCCAACAGCAUCUCUAAAUUCGAUUCUCCAAAUACCCAUACAGCUAACUCUCCAUCUGAUUUGGGUAAUCAAUCUAGGUGUUGACUCCAACAGGCUCUCUAUUUACAUCUCCAAAAUGACAAAAGGACCCACAUGUCAGCCUCUAUUGCUUUCUUCUUCCUCUUCUUUCUCUUCCUCUUUCUCUUCUCCCUUCUCAUCGACCCAUCCCCGUGCGAGGCGGACGGCGACAGCGGCGGAGGCUUCUCGCGCGCGCGAGGCGGAUGGCGAUGGCGGCGGCGGAUCCCCGCGCGCGCGAGGCGGAUGGCGAUUCCCAUGCGCGAGGCGGACGGCGGAGGCGGUAGCGGCGGAGGAGACGAAGAUGGUGGCGUUGAGUGGCGACCUCGGCAGCGUCGACGACGGCGUCGGUAACGGACGACGACGAGGCGUCCUCGGCAGCAGAGGGCAACCGGUGGCGGUUUCGACAGCAGACAACGGGGCGCCGGCAACGGACGACGACGCGGCGGCCUUUGCAGCG

Sequence
(OSA-LNCN4325.4):

ACAAAAUUUAAUGAAACUAAUUUGGUAAUGUAAAUGUUGUUAUUUUUUUCUAAAAAUUUGAUCAAACCUAAAGAACUUUGACUAAGAAAUAAGUCCAAUAACUAAUAAUAUAAAACAAAUAGAGUAGUUGUCAACGUUCUUUGCAUCUAUAUUUGUUCUUUAGUUCAGGUGUUGUUCCCUCUGUUCCCAACCACAACCGCUAGUCUAGUGAGAUGUUAGAGCAUCUCCAACAGCAUCUCUAAAUUCGAUUCUCCAAAUACCCAUACAGCUAACUCUCCAUCUGAUUUGGGUAAUCAAUCUAGGUGUUGACUCCAACAGGCUCUCUAUUUACAUCUCCAAAAUGACAAAAGGACCCACAUGUCAGCCUCUAUUGCUUUCUUCUUCCUCUUCUUUCUCUUCCUCUUUCUCUUCUCCCUUCUCAUCGACCCAUCCCCGUGCGAGGCGGACGGCGGCGGCUCCUCGCGCGCACGAGGUGGACGGCGACGGCGACGGCGGACCCCCCCCCACCCCCCGCGCGCGAGGCGGACGGCAGAGGCGAUGGCAGCGGUGGCUCCUCGCGCGCAUGAGGUGGACGGUAACGGCGACGGCGGAUCCCCCCGCGCAUGAGGCGGACGGCGGAGGUGAUGGCGGCAGCGGCUCCUCGCGCGCGCGAGGUGGACGGCGACGGUGGCGGCGGAUCCCCGCGCGCGCGAGGCGGACGGCGGCGGCAGCUCCUCUCGUGCGUGAGGCGGACGGCGACGGCGGCGGCGGAUCCCCGCGCGCGCGAGGCGGACGGCGGAGGCGGCGGCGGCGGCGGCUCCUCUCGUGCGCGAGGCGGACGGCGACGGCGGCGGCGGAUCCCCACGCGCGCGAGGCGGACGGCUGAGGCGGCGGCGGCGGCUCCUCUCGCGCGUGAGGCGGACGGCGACAGCGGCGGAGGCUUCUCGCGCGCGCGAGGCGGAUGGCGAUGGCGGCGGCGGAUCCCCGCGCGCGCGAGGCGGAUGGCGAUUCCCAUGCGCGAGGCGGACGGCGGAGGCGGUAGCGGCGGAGGAGACGAAGAUGGUGGCGUUGAGUGGCGACCUCGGCAGCGUCGACGACGGCGUCGGUAACGGACGACGACGAGGCGUCCUCGGCAGCAGAGGGCAACCGGUGGCGGUUUCGACAGCAGACAACGGGGCGCCGGCAACGGACGACGACGCGGCGGCCUUUGCAGCGAACGGAGGUGGGCCUGAUAGGGGACGACAACGGUGGAGGGGGCGGCGCUGGCGGAGAGGUGCCGGCGCGUUGGGCAGUGGAGAAGCGGAGGAGGAAUCGCGGCAGAGAGAGAG

Sequence
(OSA-LNCN4325.1):

ACAAAAUUUAAUGAAACUAAUUUGGUAAUGUAAAUGUUGUUAUUUUUUUCUAAAAAUUUGAUCAAACCUAAAGAACUUUGACUAAGAAAUAAGUCCAAUAACUAAUAAUAUAAAACAAAUAGAGUAGUUGUCAACGUUCUUUGCAUCUAUAUUUGUUCUUUAGUUCAGGUGUUGUUCCCUCUGUUCCCAACCACAACCGCUAGUCUAGUGAGAUGUUAGAGCAUCUCCAACAGCAUCUCUAAAUUCGAUUCUCCAAAUACCCAUACAGCUAACUCUCCAUCUGAUUUGGGUAAUCAAUCUAGGUGUUGACUCCAACAGGCUCUCUAUUUACAUCUCCAAAAUGACAAAAGGACCCACAUGUCAGCCUCUAUUGCUUUCUUCUUCCUCUUCUUUCUCUUCCUCUUUCUCUUCUCCCUUCUCAUCGACCCAUCCCCGUGCGAGGUGGACGGCGACAGCGGCAGCGGAUCCUCCCCCCCCCCCCCCCCCCGCGCGCGAGGCGGACGGCAGAGGCGAUGGCAGCGGUGGCUCCUCGCGCGCAUGAGGUGGACGGUAACGGCGACGGCGGAUCCCCCCGCGCAUGAGGCGGACGGCGGAGGUGAUGGCGGCAGCGGCUCCUCGCGCGCGCGAGGUGGACGGCGACGGUGGCGGCGGAUCCCCGCGCGCGCGAGGCGGACGGCGGCGGCAGCUCCUCUCGUGCGUGAGGCGGACGGCGACGGCGGCGGCGGAUCCCCGCGCGCGCGAGGCGGACGGCGGAGGCGGCGGCGGCGGCGGCUCCUCUCGUGCGCGAGGCGGACGGCGACGGCGGCGGCGGAUCCCCACGCGCGCGAGGCGGACGGCUGAGGCGGCGGCGGCGGCUCCUCUCGCGCGUGAGGCGGACGGCGACAGCGGCGGAGGCUUCUCGCGCGCGCGAGGCGGAUGGCGAUGGCGGCGGCGGAUCCCCGCGCGCGCGAGGCGGAUGGCGAUUCCCAUGCGCGAGGCGGACGGCGGAGGCGGUAGCGGCGGAGGAGACGAAGAUGGUGGCGUUGAGUGGCGACCUCGGCAGCGUCGACGACGGCGUCGGUAACGGACGACGACGAGGCGUCCUCGGCAGCAGAGGGCAACCGGUGGCGGUUUCGACAGCAGACAACGGGGCGCCGGCAACGGACGACGACGCGGCGGCCUUUGCAGCGAACGGAGGUGGGCCUGAUAGGGGACGACAACGGUGGAGGGGGCGGCGCUGGCGGAGAGGUGCCGGCGCGUUGGGCAGUGGAGAAGCGGAGGAGGAAUCGCGGCAGAGAGAGAGUGCGGGAUGGGAUGGGAGGGGGAAAAGGCGUGGGACCCACGUUUGGCUAGGCUAUUUUGGCCGGCCAAAGUUGGCCGGCGCGAGUAGUAUUUUGGCCAGCCAGCCGGCUGGCCAGGCUGUUGGAGCACGAUUUUGAUCUAAAAUUGCUAAAAUUUUGCUUGGAGAGUGAAGUAAGGGGGCUGUUGGAGAUGCUCUUAUUGUCUUUUCCUUUCCAAUUGACUCUCAUCAGUUCUAUUCUCCCUUUUAUUUACUAGAUGCCCUUUGAUGGGUAUAAUUCGGUUGUGUGUGUGUCAAGUUUAUCUACUUAUUCUGUUCUAUCUAUUUUGAGCAACUUUAGUUUACCUUGUGGAAAUUUCUAUGCAGUAUAAAGAAUUAAAGAAAGGACACAUAAAAUGUGAGCUUGAGAGAGUAUGAAGUUACCUCCCAGAAAAAUAUACAGUGCAAAAUUUCCAUAUGUUAAGUUCGUGGUAUAGAAAAUAUGGAAGCAUUCUCACCUCAUAUAAAGGGCGCCGCAUAUAUGUAUUUAUAUCAGUUGG

Sequence
(OSA-LNCN4325.2):

ACAAAAUUUAAUGAAACUAAUUUGGUAAUGUAAAUGUUGUUAUUUUUUUCUAAAAAUUUGAUCAAACCUAAAGAACUUUGACUAAGAAAUAAGUCCAAUAACUAAUAAUAUAAAACAAAUAGAGUAGUUGUCAACGUUCUUUGCAUCUAUAUUUGUUCUUUAGUUCAGGUGUUGUUCCCUCUGUUCCCAACCACAACCGCUAGUCUAGUGAGAUGUUAGAGCAUCUCCAACAGCAUCUCUAAAUUCGAUUCUCCAAAUACCCAUACAGCUAACUCUCCAUCUGAUUUGGGUAAUCAAUCUAGGUGUUGACUCCAACAGGCUCUCUAUUUACAUCUCCAAAAUGACAAAAGGACCCACAUGUCAGCCUCUAUUGCUUUCUUCUUCCUCUUCUUUCUCUUCCUCUUUCUCUUCUCCCUUCUCAUCGACCCAUCCCCGUGCGAGGUGGACGGCGACAGCGGCAGCGGAUCCUCCCCCCCCCCCCCCCCCCGCGCGCGAGGCGGACGGCGGCGGCUCCUCGCGCGCACGAGGUGGACGGCGACGGCGACGGCGGACCCCCCCCCACCCCCCGCGCGCGAGGCGGACGGCAGAGGCGAUGGCAGCGGUGGCUCCUCGCGCGCAUGAGGUGGACGGUAACGGCGACGGCGGAUCCCCCCGCGCAUGAGGCGGACGGCGGCGGCAGCUCCUCUCGUGCGUGAGGCGGACGGCGACGGCGGCGGCGGAUCCCCGCGCGCGCGAGGCGGACGGCGGAGGCGGCGGCGGCGGCGGCUCCUCUCGUGCGCGAGGCGGACGGCGACGGCGGCGGCGGAUCCCCACGCGCGCGAGGCGGACGGCUGAGGCGGCGGCGGCGGCUCCUCUCGCGCGUGAGGCGGACGGCGACAGCGGCGGAGGCUUCUCGCGCGCGCGAGGCGGAUGGCGAUGGCGGCGGCGGAUCCCCGCGCGCGCGAGGCGGAUGGCGAUUCCCAUGCGCGAGGCGGACGGCGGAGGCGGUAGCGGCGGAGGAGACGAAGAUGGUGGCGUUGAGUGGCGACCUCGGCAGCGUCGACGACGGCGUCGGUAACGGACGACGACGAGGCGUCCUCGGCAGCAGAGGGCAACCGGUGGCGGUUUCGACAGCAGACAACGGGGCGCCGGCAACGGACGACGACGCGGCGGCCUUUGCAGCGAACGGAGGUGGGCCUGAUAGGGGACGACAACGGUGGAGGGGGCGGCGCUGGCGGAGAGGUGCCGGCGCGUUGGGCAGUGGAGAAGCGGAGGAGGAAUCGCGGCAGAGAGAGAGUGCGGGAUGGGAUGGGAGGGGGAAAAGGCGUGGGACCCACGUUUGGCUAGGCUAUUUUGGCCGGCCAAAGUUGGCCGGCGCGAGUAGUAUUUUGGCCAGCCAGCCGGCUGGCCAGGCUGUUGGAGCACGAUUUUGAUCUAAAAUUGCUAAAAUUUUGCUUGGAGAGUGAAGUAAGGGGGCU

Sequence
(OSA-LNCN4325.3):

GCGGAUGGCGAUGGCGGCGGCGGAUCCCCGCGCGCGCGAGGCGGACGGCGGAGGCGGUAGCGGCGGAGGAGACGAAGAUGGUGGCGUUGAGUGGCGACCUCGGCAGCGUCGACGACGGCGUCGGUAACGGACGACGACGAGGCGUCCUCGGCAGCAGAGGGCAACCGGUGGCGGUUUCGACAGCAGACAACGGGGCGCCGGCAACGGACGACGACGCGGCGGCCUUUGCAGCGAACGGAGGUGGGCCUGAUAGGGGACGACAACGGUGGAGGGGGCGGCGCUGGCGGAGAGGUGCCGGCGCGUUGGGCAGUGGAGAAGCGGAGGAGGAAUCGCGGCAGAGAGAGAGUGCGGGAUGGGAUGGGAG

Sequence
(OSA-LNCN4325.6):

ACAAAAUUUAAUGAAACUAAUUUGGUAAUGUAAAUGUUGUUAUUUUUUUCUAAAAAUUUGAUCAAACCUAAAGAACUUUGACUAAGAAAUAAGUCCAAUAACUAAUAAUAUAAAACAAAUAGAGUAGUUGUCAACGUUCUUUGCAUCUAUAUUUGUUCUUUAGUUCAGGUGUUGUUCCCUCUGUUCCCAACCACAACCGCUAGUCUAGUGAGAUGUUAGAGCAUCUCCAACAGCAUCUCUAAAUUCGAUUCUCCAAAUACCCAUACAGCUAACUCUCCAUCUGAUUUGGGUAAUCAAUCUAGGUGUUGACUCCAACAGGCUCUCUAUUUACAUCUCCAAAAUGACAAAAGGACCCACAUGUCAGCCUCUAUUGCUUUCUUCUUCCUCUUCUUUCUCUUCCUCUUUCUCUUCUCCCUUCUCAUCGACCCAUCCCCGUGCGAGGUGGACGGCGACGGCGACGGCGGACCCCCCCCCAC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

46

LEP:

9.35%

ME_num:

423

MEP:

85.98%

HE_num:

22

HEP:

4.47%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pistil

Tau :

0.66

Avg Expression:

4.00

Tip: OSA-LNCN4325 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.301664189045244.7635917957549e-06
2Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2"1.644356808921630.0369241040170575
3Nipponbare // leaf // control--/--Nipponbare // leaf // drought1.644259348958450.0375076995637077
4Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1"1.644178915219760.0370329261079409
5Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day1.639397209453752.27404343004295e-07
6Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day1.526847799926256.47227141346569e-07