Chr:
Chr4
Start:
9288750
End:
9290647
Strand:
-
Ref_name:
OSA-LNCN4325
Sequence
(OSA-LNCN4325.5):
ACAAAAUUUAAUGAAACUAAUUUGGUAAUGUAAAUGUUGUUAUUUUUUUCUAAAAAUUUGAUCAAACCUAAAGAACUUUGACUAAGAAAUAAGUCCAAUAACUAAUAAUAUAAAACAAAUAGAGUAGUUGUCAACGUUCUUUGCAUCUAUAUUUGUUCUUUAGUUCAGGUGUUGUUCCCUCUGUUCCCAACCACAACCGCUAGUCUAGUGAGAUGUUAGAGCAUCUCCAACAGCAUCUCUAAAUUCGAUUCUCCAAAUACCCAUACAGCUAACUCUCCAUCUGAUUUGGGUAAUCAAUCUAGGUGUUGACUCCAACAGGCUCUCUAUUUACAUCUCCAAAAUGACAAAAGGACCCACAUGUCAGCCUCUAUUGCUUUCUUCUUCCUCUUCUUUCUCUUCCUCUUUCUCUUCUCCCUUCUCAUCGACCCAUCCCCGUGCGAGGCGGACGGCGACAGCGGCGGAGGCUUCUCGCGCGCGCGAGGCGGAUGGCGAUGGCGGCGGCGGAUCCCCGCGCGCGCGAGGCGGAUGGCGAUUCCCAUGCGCGAGGCGGACGGCGGAGGCGGUAGCGGCGGAGGAGACGAAGAUGGUGGCGUUGAGUGGCGACCUCGGCAGCGUCGACGACGGCGUCGGUAACGGACGACGACGAGGCGUCCUCGGCAGCAGAGGGCAACCGGUGGCGGUUUCGACAGCAGACAACGGGGCGCCGGCAACGGACGACGACGCGGCGGCCUUUGCAGCG
Sequence
(OSA-LNCN4325.4):
ACAAAAUUUAAUGAAACUAAUUUGGUAAUGUAAAUGUUGUUAUUUUUUUCUAAAAAUUUGAUCAAACCUAAAGAACUUUGACUAAGAAAUAAGUCCAAUAACUAAUAAUAUAAAACAAAUAGAGUAGUUGUCAACGUUCUUUGCAUCUAUAUUUGUUCUUUAGUUCAGGUGUUGUUCCCUCUGUUCCCAACCACAACCGCUAGUCUAGUGAGAUGUUAGAGCAUCUCCAACAGCAUCUCUAAAUUCGAUUCUCCAAAUACCCAUACAGCUAACUCUCCAUCUGAUUUGGGUAAUCAAUCUAGGUGUUGACUCCAACAGGCUCUCUAUUUACAUCUCCAAAAUGACAAAAGGACCCACAUGUCAGCCUCUAUUGCUUUCUUCUUCCUCUUCUUUCUCUUCCUCUUUCUCUUCUCCCUUCUCAUCGACCCAUCCCCGUGCGAGGCGGACGGCGGCGGCUCCUCGCGCGCACGAGGUGGACGGCGACGGCGACGGCGGACCCCCCCCCACCCCCCGCGCGCGAGGCGGACGGCAGAGGCGAUGGCAGCGGUGGCUCCUCGCGCGCAUGAGGUGGACGGUAACGGCGACGGCGGAUCCCCCCGCGCAUGAGGCGGACGGCGGAGGUGAUGGCGGCAGCGGCUCCUCGCGCGCGCGAGGUGGACGGCGACGGUGGCGGCGGAUCCCCGCGCGCGCGAGGCGGACGGCGGCGGCAGCUCCUCUCGUGCGUGAGGCGGACGGCGACGGCGGCGGCGGAUCCCCGCGCGCGCGAGGCGGACGGCGGAGGCGGCGGCGGCGGCGGCUCCUCUCGUGCGCGAGGCGGACGGCGACGGCGGCGGCGGAUCCCCACGCGCGCGAGGCGGACGGCUGAGGCGGCGGCGGCGGCUCCUCUCGCGCGUGAGGCGGACGGCGACAGCGGCGGAGGCUUCUCGCGCGCGCGAGGCGGAUGGCGAUGGCGGCGGCGGAUCCCCGCGCGCGCGAGGCGGAUGGCGAUUCCCAUGCGCGAGGCGGACGGCGGAGGCGGUAGCGGCGGAGGAGACGAAGAUGGUGGCGUUGAGUGGCGACCUCGGCAGCGUCGACGACGGCGUCGGUAACGGACGACGACGAGGCGUCCUCGGCAGCAGAGGGCAACCGGUGGCGGUUUCGACAGCAGACAACGGGGCGCCGGCAACGGACGACGACGCGGCGGCCUUUGCAGCGAACGGAGGUGGGCCUGAUAGGGGACGACAACGGUGGAGGGGGCGGCGCUGGCGGAGAGGUGCCGGCGCGUUGGGCAGUGGAGAAGCGGAGGAGGAAUCGCGGCAGAGAGAGAG
Sequence
(OSA-LNCN4325.1):
ACAAAAUUUAAUGAAACUAAUUUGGUAAUGUAAAUGUUGUUAUUUUUUUCUAAAAAUUUGAUCAAACCUAAAGAACUUUGACUAAGAAAUAAGUCCAAUAACUAAUAAUAUAAAACAAAUAGAGUAGUUGUCAACGUUCUUUGCAUCUAUAUUUGUUCUUUAGUUCAGGUGUUGUUCCCUCUGUUCCCAACCACAACCGCUAGUCUAGUGAGAUGUUAGAGCAUCUCCAACAGCAUCUCUAAAUUCGAUUCUCCAAAUACCCAUACAGCUAACUCUCCAUCUGAUUUGGGUAAUCAAUCUAGGUGUUGACUCCAACAGGCUCUCUAUUUACAUCUCCAAAAUGACAAAAGGACCCACAUGUCAGCCUCUAUUGCUUUCUUCUUCCUCUUCUUUCUCUUCCUCUUUCUCUUCUCCCUUCUCAUCGACCCAUCCCCGUGCGAGGUGGACGGCGACAGCGGCAGCGGAUCCUCCCCCCCCCCCCCCCCCCGCGCGCGAGGCGGACGGCAGAGGCGAUGGCAGCGGUGGCUCCUCGCGCGCAUGAGGUGGACGGUAACGGCGACGGCGGAUCCCCCCGCGCAUGAGGCGGACGGCGGAGGUGAUGGCGGCAGCGGCUCCUCGCGCGCGCGAGGUGGACGGCGACGGUGGCGGCGGAUCCCCGCGCGCGCGAGGCGGACGGCGGCGGCAGCUCCUCUCGUGCGUGAGGCGGACGGCGACGGCGGCGGCGGAUCCCCGCGCGCGCGAGGCGGACGGCGGAGGCGGCGGCGGCGGCGGCUCCUCUCGUGCGCGAGGCGGACGGCGACGGCGGCGGCGGAUCCCCACGCGCGCGAGGCGGACGGCUGAGGCGGCGGCGGCGGCUCCUCUCGCGCGUGAGGCGGACGGCGACAGCGGCGGAGGCUUCUCGCGCGCGCGAGGCGGAUGGCGAUGGCGGCGGCGGAUCCCCGCGCGCGCGAGGCGGAUGGCGAUUCCCAUGCGCGAGGCGGACGGCGGAGGCGGUAGCGGCGGAGGAGACGAAGAUGGUGGCGUUGAGUGGCGACCUCGGCAGCGUCGACGACGGCGUCGGUAACGGACGACGACGAGGCGUCCUCGGCAGCAGAGGGCAACCGGUGGCGGUUUCGACAGCAGACAACGGGGCGCCGGCAACGGACGACGACGCGGCGGCCUUUGCAGCGAACGGAGGUGGGCCUGAUAGGGGACGACAACGGUGGAGGGGGCGGCGCUGGCGGAGAGGUGCCGGCGCGUUGGGCAGUGGAGAAGCGGAGGAGGAAUCGCGGCAGAGAGAGAGUGCGGGAUGGGAUGGGAGGGGGAAAAGGCGUGGGACCCACGUUUGGCUAGGCUAUUUUGGCCGGCCAAAGUUGGCCGGCGCGAGUAGUAUUUUGGCCAGCCAGCCGGCUGGCCAGGCUGUUGGAGCACGAUUUUGAUCUAAAAUUGCUAAAAUUUUGCUUGGAGAGUGAAGUAAGGGGGCUGUUGGAGAUGCUCUUAUUGUCUUUUCCUUUCCAAUUGACUCUCAUCAGUUCUAUUCUCCCUUUUAUUUACUAGAUGCCCUUUGAUGGGUAUAAUUCGGUUGUGUGUGUGUCAAGUUUAUCUACUUAUUCUGUUCUAUCUAUUUUGAGCAACUUUAGUUUACCUUGUGGAAAUUUCUAUGCAGUAUAAAGAAUUAAAGAAAGGACACAUAAAAUGUGAGCUUGAGAGAGUAUGAAGUUACCUCCCAGAAAAAUAUACAGUGCAAAAUUUCCAUAUGUUAAGUUCGUGGUAUAGAAAAUAUGGAAGCAUUCUCACCUCAUAUAAAGGGCGCCGCAUAUAUGUAUUUAUAUCAGUUGG
Sequence
(OSA-LNCN4325.2):
ACAAAAUUUAAUGAAACUAAUUUGGUAAUGUAAAUGUUGUUAUUUUUUUCUAAAAAUUUGAUCAAACCUAAAGAACUUUGACUAAGAAAUAAGUCCAAUAACUAAUAAUAUAAAACAAAUAGAGUAGUUGUCAACGUUCUUUGCAUCUAUAUUUGUUCUUUAGUUCAGGUGUUGUUCCCUCUGUUCCCAACCACAACCGCUAGUCUAGUGAGAUGUUAGAGCAUCUCCAACAGCAUCUCUAAAUUCGAUUCUCCAAAUACCCAUACAGCUAACUCUCCAUCUGAUUUGGGUAAUCAAUCUAGGUGUUGACUCCAACAGGCUCUCUAUUUACAUCUCCAAAAUGACAAAAGGACCCACAUGUCAGCCUCUAUUGCUUUCUUCUUCCUCUUCUUUCUCUUCCUCUUUCUCUUCUCCCUUCUCAUCGACCCAUCCCCGUGCGAGGUGGACGGCGACAGCGGCAGCGGAUCCUCCCCCCCCCCCCCCCCCCGCGCGCGAGGCGGACGGCGGCGGCUCCUCGCGCGCACGAGGUGGACGGCGACGGCGACGGCGGACCCCCCCCCACCCCCCGCGCGCGAGGCGGACGGCAGAGGCGAUGGCAGCGGUGGCUCCUCGCGCGCAUGAGGUGGACGGUAACGGCGACGGCGGAUCCCCCCGCGCAUGAGGCGGACGGCGGCGGCAGCUCCUCUCGUGCGUGAGGCGGACGGCGACGGCGGCGGCGGAUCCCCGCGCGCGCGAGGCGGACGGCGGAGGCGGCGGCGGCGGCGGCUCCUCUCGUGCGCGAGGCGGACGGCGACGGCGGCGGCGGAUCCCCACGCGCGCGAGGCGGACGGCUGAGGCGGCGGCGGCGGCUCCUCUCGCGCGUGAGGCGGACGGCGACAGCGGCGGAGGCUUCUCGCGCGCGCGAGGCGGAUGGCGAUGGCGGCGGCGGAUCCCCGCGCGCGCGAGGCGGAUGGCGAUUCCCAUGCGCGAGGCGGACGGCGGAGGCGGUAGCGGCGGAGGAGACGAAGAUGGUGGCGUUGAGUGGCGACCUCGGCAGCGUCGACGACGGCGUCGGUAACGGACGACGACGAGGCGUCCUCGGCAGCAGAGGGCAACCGGUGGCGGUUUCGACAGCAGACAACGGGGCGCCGGCAACGGACGACGACGCGGCGGCCUUUGCAGCGAACGGAGGUGGGCCUGAUAGGGGACGACAACGGUGGAGGGGGCGGCGCUGGCGGAGAGGUGCCGGCGCGUUGGGCAGUGGAGAAGCGGAGGAGGAAUCGCGGCAGAGAGAGAGUGCGGGAUGGGAUGGGAGGGGGAAAAGGCGUGGGACCCACGUUUGGCUAGGCUAUUUUGGCCGGCCAAAGUUGGCCGGCGCGAGUAGUAUUUUGGCCAGCCAGCCGGCUGGCCAGGCUGUUGGAGCACGAUUUUGAUCUAAAAUUGCUAAAAUUUUGCUUGGAGAGUGAAGUAAGGGGGCU
Sequence
(OSA-LNCN4325.3):
GCGGAUGGCGAUGGCGGCGGCGGAUCCCCGCGCGCGCGAGGCGGACGGCGGAGGCGGUAGCGGCGGAGGAGACGAAGAUGGUGGCGUUGAGUGGCGACCUCGGCAGCGUCGACGACGGCGUCGGUAACGGACGACGACGAGGCGUCCUCGGCAGCAGAGGGCAACCGGUGGCGGUUUCGACAGCAGACAACGGGGCGCCGGCAACGGACGACGACGCGGCGGCCUUUGCAGCGAACGGAGGUGGGCCUGAUAGGGGACGACAACGGUGGAGGGGGCGGCGCUGGCGGAGAGGUGCCGGCGCGUUGGGCAGUGGAGAAGCGGAGGAGGAAUCGCGGCAGAGAGAGAGUGCGGGAUGGGAUGGGAG
Sequence
(OSA-LNCN4325.6):
ACAAAAUUUAAUGAAACUAAUUUGGUAAUGUAAAUGUUGUUAUUUUUUUCUAAAAAUUUGAUCAAACCUAAAGAACUUUGACUAAGAAAUAAGUCCAAUAACUAAUAAUAUAAAACAAAUAGAGUAGUUGUCAACGUUCUUUGCAUCUAUAUUUGUUCUUUAGUUCAGGUGUUGUUCCCUCUGUUCCCAACCACAACCGCUAGUCUAGUGAGAUGUUAGAGCAUCUCCAACAGCAUCUCUAAAUUCGAUUCUCCAAAUACCCAUACAGCUAACUCUCCAUCUGAUUUGGGUAAUCAAUCUAGGUGUUGACUCCAACAGGCUCUCUAUUUACAUCUCCAAAAUGACAAAAGGACCCACAUGUCAGCCUCUAUUGCUUUCUUCUUCCUCUUCUUUCUCUUCCUCUUUCUCUUCUCCCUUCUCAUCGACCCAUCCCCGUGCGAGGUGGACGGCGACGGCGACGGCGGACCCCCCCCCAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
9.35%
ME_num:
MEP:
85.98%
HE_num:
HEP:
4.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.66
Avg Expression:
4.00
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.30166418904524 | 4.7635917957549e-06 |
2 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.64435680892163 | 0.0369241040170575 |
3 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.64425934895845 | 0.0375076995637077 |
4 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.64417891521976 | 0.0370329261079409 |
5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.63939720945375 | 2.27404343004295e-07 |
6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.52684779992625 | 6.47227141346569e-07 |