Chr:
Chr4
Start:
8837300
End:
8837560
Strand:
.
Ref_name:
OSA-LNCN4318
Sequence
(OSA-LNCN4318.1):
GUCGGCACCAAGCCCCUUGCUUGCCCUUCACCACCGCAUGGUCCAUCGCAACUGAGCGUCGCUUGCGCUUCACCGUCUUGCCAUAGGUAGUCACUUCAUACCCGCAUCUUCAAUAUCUUCUCUUUAAUUCUCAUCCAUCGAUAAGUCCAUUUCCUAGCUUCUUCAUCGGACUAAUCACUUGCUUAUACACUCAAUAAGUGCAUUAGUCCCUUAAUCAUUUGUCAUCAAUAAACCAAAACCCACUAGGGGCAUAGAUGCUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.48%
ME_num:
MEP:
4.88%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
2.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | 9311 // leaf // control--/--9311 // leaf // salt | 3.76474724191315 | 0.0121508716139209 |
| 2 | 9L136 // leaf // control--/--9L136 // leaf // salt | 4.79130915110661 | 0.00178998774245367 |