RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN4291

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

6954535

End:

6965980

Strand:

+

Ref_name:

OSA-LNCN4291

Sequence
(OSA-LNCN4291.3):

UUCGUGCGCGUUCGGCUAUUUUCUGCCCUUCCUCGUAUCCAUCUGCGACAUUACCCACCGCGCACGGCGGCGACACGGCAGUGGCCGGCCGGGGUACUGGGCUUCAGCGGCUACAGCCUAUGGGAGUUUCUGGGCGCUGGCCGCGGCCGCCGGACCGGUGGUCUCCUGACGCGCUUCCACAAGUUUCCGACGUUCCGGAGGAGAGCGUUUCCUUUGAGGAAGGUUCCGAAGCGUUUGCGGAAGCCCAAGAAGAGGAGUAUCUCAGUGAAGGUGAUGAUCUGGAGGAUUAGGCUUGUUCUCGGUUAAGAUGCCUGUGGAGUGGAGUCGCCAUAGCUGUUCCGUAGUUUGUUAUCGUUUUUUUUCUUUUCCGCUGCGUAGAAUGUUAUUCUUUGGGAGGAACUAUCCACCUCUGUAAUAAUUUAUUUUAUUUGCGAAUAUUAAAUAGUCUUUUAUUUGAACUCUAUUAUUAAUUUGUCAUUGUGUGCCUCGGUUGAUUCCUGGACGAGGGUUUAACACACAUGUAAGCGUUUGGAAUUUUGGAUAGAAAUUCCGGGCGUGACACUACCUUUUCAACAAAAUCCUGUCAUUCAGACUAUUCCUCAUCAGUAAUUCAUUUCCUCAGUACUACUUUAGAAAAGGGCGAGCUCUGGAUGCAUUGACUAGGAAGAUGAAAGAGAGAAGAAAAUAUAUGUUUCAGAACACUGUGUCUCAGAAAAAUUGUGUGUCUUGGAAAAAUUGUUUUGGCCAGCUUAUGAUCAUUUUAAAACCAGCUAGAAUCUGUUUGCCAGAAUCCAUUUAAUAUUAAUCAGAUCUGGCACAAUCAGGUCCUGCAUUG

Sequence
(OSA-LNCN4291.1):

CGGAGUACCAAAAUUCCCCAGUAGCAGCCGCCGCCGCCGCCGCCGCCGAUUCACCAACCCUUCUCCUCCAUCGGCAUGUCGCGGGGGGGAGGCCGGCUGCCCCCGCGCUUCUCUCUACCCAGCUGUACCUGUACCUAAAAAAGGAGGUGUUUUUUUAUAGAUGUGAAAUAUGCUGGAUCAUGUGGUUGUAGAGGAGAUAAUAUUACUUCAUGAUCAAACAUAUUUAAAGUCAUCUAUUUCAGUAAGAAAAUGUUUGACUCAAACAGAUUCAGAGGCUCAGAGCUCAUUGUAUCAUAAUCUUUCAUACGUAUGUAAACAUUAUUUGUUGCAGGCAGGCAUGAGUGCCCUGAAUAACAUGACUCAUAUCAUGCUUUAAGCCUUUAACACGAAGCCCUAUAUCGAAGAAGUAUCAGUCUAAAGAAUGCUAUUGCUUCAAAUUACAAUCUGUUGUUUAUUAACAG

Sequence
(OSA-LNCN4291.2):

CAACCCUUCUCCUCCAUCGGCAUGUCGCGGGGGGGAGGCCGGCUGCCCCCGCGCUUCUCUCUACCCAGCUGUACCUGUACCUUUUCCGACGUUCCGGAGGAGAGCGUUUCCUUUGAGGAAGGUUCCGAAGCGUUUGCGGAAGCCCAAGAAGAGGAGUAUCUCAGUGAAGGUGAUGAUCUGGAGGAUUAGGCUUGUUCUCGGUUAAGAUGCCUGUGGAGUGGAGUCGCCAUAGCUGUUCCGUAGUUUGUUAUCGUUUUUUUUCUUUUCCGCUGCGUAGAAUGUUAUUCUUUGGGAGGAACUAUCCACCUCUGUAAUAAUUUAUUUUAUUUGCGAAUAUUAAAUAGUCUUUUAUUUGAACUCUAUUAUUAAUUUGUCAUUGUGUGCCUCGGUUGAUUCCUGGACGAGGGUUUAACACACAUGUAAGCGUUUGGAAUUUUGGAUAGAAAUUCCGGGCGUGAC

Sequence
(OSA-LNCN4291.4):

UUCCUCGUAUCCAUCUGCGACAUUACCCACCGCGCACGGCGGCGACACGGCAGUGGCCGGCCGGGGUACUGGGCUUCAGCGGCUACAGCCUAUGGGAGUUUCUGGGCGCUGGCCGCGGCCGCCGGACCGGUGGUCUCCUGACGCGCUUCCACAAGAAUUUAUCUAGCUAAGUCAAUAUUGGUAGUGAAGUUUAUUUUCCCUUUUUUCCCUCCUGGAAAAUGCAAGUGUAGUUUUGAAGAUGUGGAUUGUGGAAUAUGCUGGUUGCUAGAACAGUUUUUUGCCACAUUUUGGUUGUCAAUAAGAGAAGUUUGUCCCUUGUGAUGAGAACAAACAUAUAGCCCUUAGAGAAUGAAAUUUGUAGCUCUAAAAAAAAAAGAACGAAAUUUGUCAGUCUUGAUCACCUUGGAAAUUUCCAUACUAGACUGAAUAAAUCCCUACUGUUCUUCGUGAUACUUUGAGUCUACAGAUAUAUGGCACAGUGCAGUUUCCUGGUAGAUGUCACAUGAAGUAAAAACGUUGAAUACCAUAAGUCCAGAACUUGUGAGGCUGAGGCUGUACUUCUCAAAUGCAAUUACUACCU

Sequence
(OSA-LNCN4291.5):

CACGGCAGUGGCCGGCCGGGGUACUGGGCUUCAGCGGCUACAGCCUAUGGGAGUUUCUGGGCGCUGGCCGCGGCCGCCGGACCGGUGGUCUCCUGACGCGCUUCCACAAGUUAGCAAUGAACACUGUUCUGCAUACCUCAAACAUAAUUCCCUCUAUCACUAAUGACCCCAUAAAGGUACAGUUAAAACAAAUCCUGUUAGUUUGUUCUUCUCUCACAAUUUGUAUAUGCACUAUGCUUUUUGUUUGUUUCCCACCAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

215

LEP:

43.7%

ME_num:

256

MEP:

52.03%

HE_num:

20

HEP:

4.07%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.87

Avg Expression:

9.63

Tip: OSA-LNCN4291 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae-3.198933785152760.025790119413159
2Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-1.794486113599750.000358581642697871