Chr:
Chr4
Start:
6911580
End:
6912039
Strand:
-
Ref_name:
OSA-LNCN4290
Sequence
(OSA-LNCN4290.1):
CACCACCUCUACACCAGCCUCUAACGAACUGUGGGAUACGCAGCAAUCACUGAAUGGAAUGGGGAGAACACCUCACACCCAAUGGGAGGGGUGACCAUGUAUUGAUAUAGGAAGCACAUGUACAAGAUCCUCAAUUAGAGGAGAAUACAAGGAAAGAAACAAUACAAUACAAUCUGUACAUAUAUGGCAAAGUAUUCCUAAUACCCACCCGCAGUCGCAGCGAGAGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
97.56%
ME_num:
MEP:
1.02%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
1.00
Avg Expression:
1.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.94228642965847 | 0.00827195221914651 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.04716357480813 | 0.0050290754069327 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.19422638686763 | 0.00374042948129581 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.17931484655576 | 0.0497496042386731 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.43469856356252 | 0.0218156179934787 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.60249536519082 | 0.0170654887816307 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.3067027590586 | 0.00268317202241461 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -3.95398628093207 | 0.0378779200308842 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.00906300125855 | 0.00440880200733608 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.48718556079853 | 0.00173410773257562 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.89776371986306 | 0.00870137695703177 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.62976959522198 | 0.000863682158479764 |