Chr:
Chr4
Start:
6104610
End:
6118194
Strand:
-
Ref_name:
OSA-LNCN4267
Sequence
(OSA-LNCN4267.1):
GUGGGCCGUUCGAUUUUCUUUAACCUCUCUCUAUAUAAACAACAGAAAAAAAAGAAAAAAAGGAACAGGAGAGAUCGAUACCUUGAAGCCCUAGCCACUGCUACUCUUGCGCCCCUGCCGCCGCUGCUGCCGUUACUAUCACUGUCGCCGCCGCUUCUGCGUCACCACCACCGCCCCGACUGUUGCCGGUUGCUGCAGCCAUCAUCCUCCUUCGUUAUCGGUGGUUUCUUACUAUUCUGCUCCUUUCCGCGAGGAAAUGGUUCAGAGGGCAGAGAAAGCAGGAGGGGAAAAGAAGGAAAAAGGGAAGAGAGGCAAAGUUGGGGAUUUUUCUGGGAUUCCAUAAAUUCACCUCAAAUAUGAUUUUUAUCCUCUGCAAGGAUGAUAAACCCUGACGUUGGGAGGAAAUCUAGACUAAAGUGAGGAGAAUUAUGUAUCCAUACAAGGAGGGGUUGUGAACUUCAUAAAAACAUCAGCGAAUCAAUCCAAAACUCCGAGAAAUGGAUAGAGGAGAGCCUAGGGAGUCCGCAGUCCGAAGGCCAGGCCAGGAGAGCCCAUCAUAGGUUCGCCCGAACCCCCUGGAUCGGCCGAACCCCCCUGGUCGCUGUUGAUCCUGGGGUUUGGCGUGGACGCUCCAGAUGCUCUCCCAAUGAUGGUUGCGGGGCAGUUCGGACAUUUCCCCUUCUCACAACCGUCAUAACUGCCCUAUAAAAGGACAUCACUCCCUCACUUCACACACACAGUUCCAAGCUUGAGCUGAAUUAUAAGAGACUCUAUUGUACUAUAUUGUAUACUAGAAUAGGAAGAGAGUAGAGUAGAAGGA
Sequence
(OSA-LNCN4267.2):
GGUUGAGUAUCUUAUCCGAAUCGAACUCGUUUUUGAGUUUAUCUCCAAAACCGAGUUUUUGAUUUCCCGGAUCGAUUUCUAGCGGGAGGAGUCCGAUCUCUUCAAUCCAAGGCUAUAAAUAGGACCCCCUAGUCCUCCUCUUUCGUUUGCCCCCUUUCCCGUCCUCUCCCGUGCACCGUAGCUCGCCGUCGACGCCGCAUAGUCCGCCGCCGCCGCCGGCCGGGUUGCAGCCGCGCCGAGCCGCCGCCUCCGCCGUCGCUGCCGCUUGCCGCCAUCGCCUUUAGAUGCGCCAAGCCGUGGGGAAGCUCGGCCACCCGUCCCCUUUCGUCGCCGGCCACCGGAGCUCCAUCUCCGGCGAGGUCCGAGCCGCCGCCGCCGUUCAUCUCGUCGCCGGCCGUCGUCGUUCGUCGUUUGGUUCGAGGUUUCCGACGUUCCGGAGGAGAGCGUUCUCGUUGAGCAAGGUUCGGAAGUGUUUGCGGAAGCUCAAGAUGAUAAACCCUGACGUUGGGAGGAAAUCUAGACUAAAGUGAGGAGAAUUAUGUAUCCAUACAAGGAGGGGUUGUGAACUUCAUAAAAACAUCAGCGAAUCAAUCCAAAACUCCGAGAAAUGGAUAGAGGAGAGCCUAGGGAGUCCGCAGUCCGAAGGCCAGGCCAGGAGAGCCCAUCAUAGGUUCGCCCGAACCCCCUGGAUCGGCCGAACCCCCCUGGUCGCUGUUGAUCCUGGGGUUUGGCGUGGACGCUCCAGAUGCUCUCCCAAUGAUGGUUGCGGGGCAGUUCGGACAUUUCCCCUUCUCACAACCGUCAUAACUGCCCUAUAAAAGGACAUCACUCCCUCACUUCAC
Sequence
(OSA-LNCN4267.3):
GUGGGCCGUUCGAUUUUCUUUAACCUCUCUCUAUAUAAACAACAGAAAAAAAAGAAAAAAAGGAACAGGAGAGAUCGAUACCUUGAAGCCCUAGCCACUGCUACUCUUGCGCCCCUGCCGCCGCUGCUGCCGUUACUAUCACUGUCGCCGCCGCUUCUGCGUCACCACCACCGCCCCGACUGUUGCCGGUUGCUGCAGCCAUCAUCCUCCUUCGUUAUCGGUGGUUUCUUACUAUUCUGCUCCUUUCCGAUGAUAAACCCUGACGUUGGGAGGAAAUCUAGACUAAAGUGAGGAGAAUUAUGUAUCCAUACAAGGAGGGGUUGUGAACUUCAUAAAAACAUCAGCGAAUCAAUCCAAAACUCCGAGAAAUGGAUAGAGGAGAGCCUAGGGAGUCCGCAGUCCGAAGGCCAGGCCAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
75.41%
ME_num:
MEP:
24.39%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.83
Avg Expression:
1.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -3.70803693158268 | 7.98258473984405e-06 |
2 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -2.90662266461403 | 0.000124780297136345 |
3 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.99357181484227 | 0.0287582317034082 |