Chr:
Chr4
Start:
5625442
End:
5626014
Strand:
-
Ref_name:
OSA-LNCN4254
Sequence
(OSA-LNCN4254.1):
AAUGCCUAAGUCCCUAAGGAGCACAAUGGGCCACGCUGUCAAAAGUACUGGGCUGAGGUACUGUUCAGGCCUAAGCCCAUUUGCACCUCCGAUACCCUUAACAAGAAAUCCCGAGAUCCAAGCGACACUUCAUCUUCCCCGCCGGAACUCUCGCCAUUUUCCCCACUCCCUGCUACAGUACAAAGCUGCGCCGGCAAACUAGGGUUCACCAUUCCACUCAAAUCCACCUUCAAAAAGUUCAUCAAAAUCCUUCCCGCGAUCCACCGCCUCAAUCCCUCACCUCUCCCUAGCCAUCCCUCGAAUCAAAUCAGCGCAUUCGAGUAAAAUCAAUGGCAGAAGAGAAGGAAAGCUUUGAAGGCCAAUGGGCGACAUCCGACAUGAUGGAGGAGAACCUGAAGGAGAUGGUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
75.2%
ME_num:
MEP:
21.34%
HE_num:
HEP:
3.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.92
Avg Expression:
3.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.01684888329361 | 0.0459846668033603 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.63938858669067 | 0.00154969088708643 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.90768854637246 | 8.57617199637911e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.26179945489037 | 0.0196460988352859 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.2894988568713 | 0.0121017524719846 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.59476039412091 | 0.000152420316025509 |