Chr:
Chr4
Start:
5608638
End:
5631324
Strand:
+
Ref_name:
OSA-LNCN4253
Sequence
(OSA-LNCN4253.1):
AUUAGGCAAUUCAGUUACUGUAGGACUGCAUAUAAUAUCUGAGGUUCAUAACAGGGCAGAGUAAGGAUGCUGAUUCUAUAAAUAAUCUAAAUGAUUACAAGCUUACUCGCAUCCAGCACUUGGCACUCAACAUCUAAGUCUCCAAUGUAAAAUGGGUCCACCUAGUACUGUAAUACAAUCCUUUUAAGUCUGCAUUUUUGGGUAAAAACAUUUGUUUGGGAAAAGACAAAUCAUGAUUGUUUAAUUUAUUUUUCAGUAUUGUUUUGUGGGAGUGGGUGGGUAGUUCACAAUUUCAUCUAUCCAGUUCAAUCAGUGCACCAUCACAUUCAGAAUUCACAUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.64%
ME_num:
MEP:
31.1%
HE_num:
HEP:
66.06%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.64
Avg Expression:
19.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.49767190475022 | 0.0162840339419247 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.53952418373381 | 0.0151764456899632 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.81289801774831 | 0.000635137270752053 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 6.41243522181047 | 0.00389291836569576 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.399754045541 | 0.0170150549055461 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.29755610381127 | 0.00376305385879488 |