Chr:
Chr4
Start:
4914614
End:
4915148
Strand:
+
Ref_name:
OSA-LNCN4238
Sequence
(OSA-LNCN4238.1):
CAUGCCACCAAAAGAAGAACAAUGUUAGCUACAUAUUCCACAAUAGAAAGCUGGGCAGAGAUAGUGCCGAGCCGAGCGGCCCAAGCGGCGAUGGCACCGAGAAAAGCGGCGGUGGGGCCUAGCACUCGUCGAUGCAUCACCCCUCCCCUCCCCGCACCCCAGUACAGCAGUGAGGUCAGUGGCUGUUAGUGGGAUACAACGAGGUCGGUGACGUGGUACCGGCGGACGGCAUGGUUAGUAGUGGAGGACGGUGAGGUCAACGGUGCGGUAGUGGGGGACGACAGGAGCUCGGCGGUUCUUGGAAUUGGAGGCGUCAGUCGGCAAGGGCACCGUCGUCGCUUCACCACCUCCGCACCAACCACCGCGGCAAGCUCCUAUUUGUGUUAUAUAUAUAAUUGAUAAUCUAAUAAUAAGAUGCUUGUGCCUUUAUGAUGAAAUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.07%
ME_num:
MEP:
33.94%
HE_num:
HEP:
11.79%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.86
Avg Expression:
7.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.26154752558113 | 0.015464251675775 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.63209819145041 | 0.00226952430110525 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.85865815739258 | 0.000742914702580117 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.94853506577293 | 0.00383907389909242 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.8059762051927 | 1.07074697735302e-06 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.38764408555882 | 0.04089808091469 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.35202184346089 | 0.000528395544524677 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.53247978858637 | 5.23235039145482e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.39056507337008 | 0.000110271625095901 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -9.29520992306384 | 3.76460138792792e-15 |
| 11 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 1.81242584202167 | 0.000413140917023497 |
| 12 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -3.63445248385949 | 0.0320493193297518 |
| 13 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -6.21669994051954 | 0.000107652276452392 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -7.00909679776161 | 4.04006305218257e-27 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.54873817920035 | 0.00395277357215351 |