OSA-LNCN4220


Function Link


Basic Info

Chr:

Chr4

Start:

3941468

End:

3944096

Strand:

+

Ref_name:

OSA-LNCN4220

Sequence
(OSA-LNCN4220.1):

GUCGCCGCCCGUAGGUGCGCCAAGGGGUGGAGAAGCCUGGCCGCCCGUCCCCCUUCGCCGCCGGCCACCGGAGAGCCGUCGCCGCCGUUCAACCGAGCCGCCGCCGCCUCUUGCGUCGUCGCCGGCCGUCGUCGGUUGUCGUGGGACGUUUUGUUUGUGUACCUCGACUGAUUCCUGGACGAGGAUUUUAUGCACAAAUUAGUUCGGAAAUUACUAGUGAAUUUCCGGGCGUAACAACCGUCCACCCAAUGAAGGAUCAAGCCAGAGGCGUCAACUUCGACAAAGGCGAAGGCACACGGCGAAGGCUAUGCGGCGAAGCAUGUGGGCGAAGAUCAAGGGCCUGGCUCCGAGCUUCGCAGUUCGAAAGACCACAUGGGCAAAGGGUAUAUGGCGAAGGGCAUUUAGCGAAGCAUAUGGACAUCACCCAAGACGGGCCCUGGGCGGAGAAGGCCCAAUGGGCCACUAUGCGCCCGGGGGCCCUUUCGCCAUGGCUAGGCCAAGCUUGUUGGCCCGUUAAGAGCCCAUAUAUGUAAAGGACACAGUAUGCCCUCAAUAAUGUCCCUAUCAUAAGGGCAACCAUGUAAAAUCCCCUAUAAUCAUAAACCCUAGAAGAACAGAGCCUAUAAUAGGGUUAUAAAUAGCCCCCUAAGGCCAUGUAAUGGGGGGAUCCCCAAAAAAUUUCUAAUCAACCAAUACAGUCGUCUUUAUUUCCAACCUGUUGAGAGAGCCACGUCGUUCGACGUGACGCAGUUAUCGUUCGACAACAAAAAC

Sequence
(OSA-LNCN4220.2):

GGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUUCUUUUCUUUGUAAGAUCAAGCCAGAGGCGUCAACUUCGACAAAGGCGAAGGCACACGGCGAAGGCUAUGCGGCGAAGCAUGUGGGCGAAGAUCAAGGGCCUGGCUCCGAGCUUCGCAGUUCGAAAGACCACAUGGGCAAAGGGUAUAUGGCGAAGGGCAUUUAGCGAAGCAUAUGGACAUCACCCAAGACGGGCCCUGGGCGGAGAAGGCCCAAUGGGCCACUAUGCGCCCGGGGGCCCUUUCGCCAUGGCUAGGCCAAGCUUGUUGGCCCGUUAAGAGCCCAUAUAUGUAAAGGACACAGUAUGCCCUCAAUAAUGUCCCUAUCAUAAGGGCAACCAUGUAAAAUCCCCUAUAAUCAUAAACCCUAGAAGAACAGAGCCUAUAAUAGGGUUAUAAAUAGCCCCCUAAGGCCAUGUAAUGGGGGGAUCCCCAAAAAAUUUCUAAUCAACCAAUACAGUCGUCUUUAUUUCCAACCUGUUGAGAGAGCCACGUCGUUCGACGUGACGCAGUUAUCGUUCGACAACAAAAAC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

437

LEP:

88.82%

ME_num:

53

MEP:

10.77%

HE_num:

1

HEP:

0.2%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.94

Avg Expression:

2.73

Tip: OSA-LNCN4220 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-5.618799048705220.00257194287739299