Chr:
Chr4
Start:
3281506
End:
3287296
Strand:
-
Ref_name:
OSA-LNCN4199
Sequence
(OSA-LNCN4199.1):
UAUUCGACGACAAGAAGCUACAGUUCUCGACUCUAUGUUCAGUUGUUUCCCAACUAAUCAAAGAGUCGGGGGCUACACAAAUAUAAGGCUCAAAAUUUGACAAAUUUUAUGUCAAGCUGAAGAAAUCAAUUCAUCAACCCACGAGUCAACUCCAGGAGUCAUUAUCUUCAUCUUUGCUUCGGAGCAGACAUUCUACUUCAACAACUUCAAAUAUUUCGGUUUAGACGAGUUGGGCAACAACAUCAACUCUCCUCCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.51%
ME_num:
MEP:
4.67%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
1.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 5.28388614615462 | 0.00516428424043524 |
| 2 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 5.07956624508391 | 0.0189993755374605 |