Chr:
Chr4
Start:
1320490
End:
1321486
Strand:
+
Ref_name:
OSA-LNCN4174
Sequence
(OSA-LNCN4174.1):
GCCAACCUUCAUGUAGUUAAACAAAAAUUAUGAACACUACAAGGGAUUUGACUGCAUAAGCAUAUGCAGGAAUUCUAUAUAUAUUGGCUAGUAGCUAGCUUCAGUUACUGCAGGAAGCCAGGAACCAACCAGAAGAAAUGGCUUCAUCAUCAUUUGGAGUAGGAGGUGGCCUGAAACUGAUGAGAGCUCGUGGUUUGCUCGUGUUUUCAGAGAUGAUGGCGCUGCUGCUGAUCUGCCUGGUGAUGAUGAGCAGCUCCGUUAACACCUGCCAAGGCCGAUCUUUGCUUGCGGUGUCCGUUGGUGAGAAGAAGGUGCCGCAUUUUGAGCAACCUGUCGGCUGCUUCGAGCCUCCAUGCCGCUAGCUUAUAAGCUAUGGCUGCCUGCUUCAGACAGGCUUAAUUACCUGGCUGCAAGUAUUAAUAUGUAUAGUCAUGAAUAAGCAUAUGACUUGUUCGGUGUAUAUGCUAGUUGCUUGCUGUACUGAUAUUGUCUCAAAAUAAAUUUAAUUAAGGACUUGGGCACUACAUAUAUAUACUGAUAUACACAUCGAUUUCAAGUCUCUGUUGUUAUUCAGAAUUCCAGAUGCUCCAGGCCUCCAAGUAGGCACUGAAAUAGACAUGUGUGAUGUGUGUUGUACACUCUAUCUGAAUGUUUACUGAAGAAGAGAAUUAUGCAUGCAAAAGAUAGUUUUAUUUUCGAUCCCUUCUACAAGUUACAUAUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
37.4%
ME_num:
MEP:
24.19%
HE_num:
HEP:
38.21%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.87
Avg Expression:
55.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -4.29556267396977 | 0.0310211809721707 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.14734815563765 | 0.000439778816780157 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.44459327309811 | 8.99473068938279e-29 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 2.40386201391213 | 0.00253526882110788 |
| 5 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.71300562287958 | 2.21852910640968e-09 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 2.63110307588689 | 2.79499788048616e-26 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 2.34436593866901 | 1.08508660810379e-26 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.53875985318473 | 2.64473344336382e-31 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.07055314153965 | 6.14635288128693e-07 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.90606829561071 | 4.51894262077898e-37 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BXOR1 | 1.67917575206337 | 0.00621286592093691 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.81265486369996 | 5.52419603542957e-13 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 2.97041790587402 | 6.66051326813378e-49 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 2.94181541108747 | 3.21073942441062e-18 |
| 15 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.73623207808694 | 6.31348305164193e-07 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 3.18454674283123 | 1.98032048472339e-33 |
| 17 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.73615630240249 | 5.94397618708603e-07 |
| 18 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.73599928005571 | 6.37132983373518e-07 |
| 19 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.46214035259436 | 4.86542354468774e-22 |
| 20 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 5.59196531461402 | 5.2957957014297e-62 |
| 21 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.69723344467422 | 8.25128695087107e-245 |
| 22 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.770570262625 | 1.02024175048041e-05 |
| 23 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.60262017881769 | 0.00351173692329794 |