Chr:
Chr4
Start:
1434610
End:
1437017
Strand:
+
Ref_name:
OSA-LNCN4172
Sequence
(OSA-LNCN4172.2):
CCUACCUCCAGCCGGCCGGCCGGCCAAGCCGAGUCCGAGCCGCCGCCUAGCGCCGCCGAUUCCGCCCUUCUCGGUCGACCUCGAGUCCGAUUAGUUGAGGAGAAAUACUCUCCUCCUUAUCCUCUUCCUUUCCCCUAAAGUCUCAGAGACUAAUUUCUCCCGGAUAAACCAAAUCGAGUCCGUUUGAGUUUAUCUCUCCAAACUAACCUGAAGAUUUUCCGGCUUCGAUUCCUCUCGUGUCGCCGCCGCGCCGCCCUAGCCGCCGCCGUCGCCGGUCGCCGCUCAGCCGCGCCGGCCACCGUUCGUCGUCGUCCGUCGCGUUUUCUUGCACCGUUUCCGACGUUCCGGAGGAGAGCAUUUCCGUCGAGGAAGGUUCAGAAGUGUUUGCGGAAGCUCAAGAGGAGGAGUACUUCAGUGAAGGUGAUGAUCUGGAAGACUAGGCUUGGUCCGGGUUAAGUUGCCUGUAGAGUGGAGUUGCCAUAGCUGUUCCGUAGUUUGUUUUUAUUUUCCGUUGCAUAGAAUUUUAUUCUUUGAGAGGAACUAUCCACCUCUGUAAUAAUUUAUUUUGCGAAUGUUAAUUACCUGUUUGAUAGUACUCUAUUAUCAAUUUAUUAUCGUGUGCCUCGGCUGAUUCCUGGAUAAGGGUUAAACGCACAUGUAAGCGCUUGAAAUUUUGGAUAGAAAUUUCGGGCAUGACAAACCCCCCCCCCCCCGCCGCCUCGUUGCUGACGCCGCCGACCCCGACUCCGCCUCCCGCCGAUGCCGCCCCGACUUCGAUGCGGCCGCCGCCGCCGAUGCCGGCCCUGACGCCGACACCACCCCCACGC
Sequence
(OSA-LNCN4172.1):
CUCGCGGGUCACCGACAUGUGGGGCCCACAUGUCGGAUCCACCCCCUACCUCCAGCCGGCCGGCCGGCCAAGCCGAGUCCGAGCCGCCGCCUAGCGCCGCCGAUUCCGCCCUUCUCGGUCGACCUCGAGUCCGAUUAGUUGAGGAGAAAUACUCUCCUCCUUAUCCUCUUCCUUUCCCCUAAAGUCUCAGAGACUAAUUUCUCCCGGAUAAACCAAAUCGAGUCCGUUUGAGUUUAUCUCUCCAAACUAACCUGAAGAUUUUCCGGCUUCGAUUCCUCUCGGUUGGAGCCCGAUCUCUUCAAUCCAACCUAUAUAUAGCAUCCCCUUGGCGUCCUCUUUCAUUUGCCUCAACUCCCGAGCCCUCUCGUCCCUUGUAGUGUCGCCGCCGCGCCGCCCUAGCCGCCGCCGUCGCCGGUCGCCGCUCAGCCGCGCCGGCCACCGUUCGUCGUCGUCCGUCGCGUUUUCUUGCACCGUUUCCGACGUUCCGGAGGAGAGCAUUUCCGUCGAGGAAGGUUCAGAAGUGUUUGCGGAAGCUCAAGAGGAGGAGUACUUCAGUGAAGGUGAUGAUCUGGAAGACUAGGCUUGGUCCGGGUUAAGUUGCCUGUAGAGUGGAGUUGCCAUAGCUGUUCCGUAGUUUGUUUUUAUUUUCCGUUGCAUAGAAUUUUAUUCUUUGAGAGGAACUAUCCACCUCUGUAAUAAUUUAUUUUGCGAAUGUUAAUUACCUGUUUGAUAGUACUCUAUUAUCAAUUUAUUAUCGUGUGCCUCGGCUGAUUCCUGGAUAAGGGUUAAACGCACAUGUAAGCGCUUGAAAUUUUGGAUAGAAAUUUCGGGCAUGACAAACCCCCCCCCCCCCGCCGCCUCGUUGCUGACGCCGCCGACCCCGACUCCGCCUCCCGCCGAUGCCGCCCCGACUUCGAUGCGGCCGCCGCCGCCGAUGCCGGCCCUGACGCCGACACCACCCCCACGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
55.28%
ME_num:
MEP:
43.29%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.76
Avg Expression:
2.47
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.8630215585463 | 1.15054780280864e-05 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.75678456697579 | 0.0326857020503902 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.80529126545169 | 0.00575343843761188 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -2.01030461012482 | 0.0203478676963366 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.7877820969927 | 0.0281029743002198 |
| 6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.20860542201802 | 7.60258214172281e-05 |