Chr:
Chr4
Start:
652819
End:
660098
Strand:
-
Ref_name:
OSA-LNCN4162
Sequence
(OSA-LNCN4162.1):
AAAACCAGUACCAAACAACUCCCUUUGUGGUUUUUGACGGUGGUUUUGCUGACGUGGCAUCCCAGUCAUAAAAAAAUAUUAAAAAAUUAUGUGAGGGCCCACAUGUAAGUAGCAUUUCUAUUCUUCCUCCUCCACCACUCACCUCUCUCCUCCCCCUUCUCUCUCCCCGGACAGAGCACGGCCAGGGGAGGCUCCAGAGGCGUGGGAGGUGUGGGGACCGUCGGAGGAUGGAGGCGCACGCCGGGAGGGCGGGGCUCGCCGGCCGCAGCGCCCGCGUGGGGAGGGUUCACCUUCCACGGCGAGCGCGGGGCAGGGGUUUGCCGGGCGCGGCGCACGCGGGGAAGGGACUCGCCAACCGUGACGCCUCCUCUAUGGUCAGCUCCGCUGACGGUGACGGCUGCUGCUGCUCGGCAGCGGCGUUGCUGACAACCUUGCCGGCGUGGAAGGAAGAGCUCGUCGGCCGGUCACGACGCGCGUGGGGAGGAGCUCGUUGGCCUAGCCCCCGGCUGCCUCAUCGUCCCCGUCCGGCGUCGAUAUGCUCGGCCGGUAACUCAUCCUCCCGCUGUCUAUCCGCACCGCCGACCUCCUCGCAUCGCCGAUCCAAACGGGAUCAAAUCAACUGGCACGCCUUUGAACCCAAGAACAAAAUUUAGGACCUGCACUAGAGUUAAGCAGAUCUCCCAGGCUAGUGUGUUUUUCGCAUCAACAACCGGCCUUCUAGCGGUGGACUGACCGGCCUACAUACGGCGGUCAAACCGGCCCUCCUAGAGGAAAACCGGCAGAACUUUCAAACUUUGGCAAUUUUCCCUAUUUCAAUCCUAGAUGCCAAAUUUGGGUGUAAACACAAAUCCUUAGAUUGAGUUUUAUUUUUUCCUUGACAGGGGAGGUAAUCUGUUAGAGAGACAAAUGCGGUUUGGAUCUACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
47.15%
ME_num:
MEP:
50.2%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.78
Avg Expression:
2.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.49928475029755 | 0.000105125980208155 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.00304958480196 | 0.0144175157791535 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.29712047835783 | 1.67238534516892e-11 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.72842365688481 | 0.00791455727864287 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.2572396545693 | 2.05067419283046e-05 |
| 6 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.12621724188246 | 0.00874542340735697 |
| 7 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.04753840327738 | 0.00330295828697136 |