Chr:
Chr4
Start:
215742
End:
219496
Strand:
+
Ref_name:
OSA-LNCN4155
Sequence
(OSA-LNCN4155.1):
UGCAGUGGCGGCGGCAUCCAUCGCCGGCCUCCACUGUCUAUGCCCUCGUCCGCCGCCGCCUUGUCCUAGCCCGAGCGGAGGAAGGAGGGAGCGGGAAGCGUCUUCGUCUUCGAGGUCGAGGUCGUGGGCCAUCGAGGUCGUCGUCGUCGAGCAAGGUCGGCGUCGCCAUCACUAGCCUUUGCGCAGUUGCCUUCGCCAUCCCUGUCCCGAGCUCCGCCACAGCCCCCCGAAGACGUUGUCGUCGUCACUUGCCGCCUCCCAUCUUGUCCGUCACCGCCGCCUUGUCGCCUCGUCGAGCAAAAGGGCCUGAGCGGGGCGAGGCCGCCGCCGCGCCGCCUUCCGCCUCCCCGCGCCACCUUCCGACUCCCGCCUCCCCGUGCCUCCUUCCACCCCCCCGCGCCAUCUUCCACCUUCCGAUUCCCGCCUCCUUGUGCCUCCUUCCCCCACCCCCCUCGCCACCUUCCACCUUCCGUCUCCCGCCUACCGUUGCUGCGCACGCGUCGACGGCUGCCUGGAUGGCCCCCUGUGUCGUACCGCACACUGUCGCCCGCUGCGCUGUAGUCCGUGACGGAGAAGACGCGCGCGGCCACCGCGAGCGGCGGUGGCAGGAGCAGGAGCAGCAGAAGGGAAGUGACAACAACGAGAAGGAAGGAAAGGGGAAAAGAAUGAAAGAGCAGGAAGAAAGGGGGCGAGAGAGAGAGAGAGCAGGAAGAUGAGUAGAGGCUGACAUGUGGAUCCGUUGUUAUUUUGGAGAGGAUUAAUAGAGAGUUUGUUGGAGUGACCAUCUAGUUUGACUAGCCAAAUCAGAUGGAGAGUUGGCUAUAUGGGUGUUUGGAGAGUCCAAUUUGGAGAGGCUGUUGGAGAUGCUCAACCUUACCAACUGGCUUACCAAGUCAUUUGGCUAGCCAAACUCCCCUGGUCACUAGCUAGAUUUGGCCAUGCUAUUUUGCUGGCCAACACUGGACCCCAUGCGGGGAAUCUCCUCCCUACCCCCCUCUCUCUCCUGCAUCGUCUCUCUCCCAUCCCGGAGUGUGCCGCACCCCCUUCCUCCUUCCCCCAUCCAGCCUCUCUCCUCGCCAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.22%
ME_num:
MEP:
81.1%
HE_num:
HEP:
17.48%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.51
Avg Expression:
5.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 4.0079876320369 | 0.00258199654524852 |