Chr:
Chr4
Start:
92843
End:
95509
Strand:
-
Ref_name:
OSA-LNCN4153
Sequence
(OSA-LNCN4153.1):
CACAGGAUGAAUUACAAACCCUAAGCUAAGAGUGGAAAUUCUGUGGUUGUGCUGUUGCAAAACAAAGAUAGAAGCUGUCAGGUGCAGCAAUUGCUGUUUGCAAUGUUCACGUGACAUGUGAUUACAGUAGUCCACAUCAUUAGUUGAUUUAUUUAAGUUAAAUUUAUCCCUUAGUCACAACUUACAAAAGCAUGCUAUACUCAGCAUUGUUCCACAAAGAUAUAAUUGGCCAUACGUUUUGUAUAACUUUGGAUGGGAAGUUGAUUAAUGGCAUGUGGGUCAUGGGGCCAAUAAAGUGUGUAUCACGCUGCCACUAAUUUAGCUAAUUGGCUUAUAAAUGUCAAAUUUUGCGCAAGUUUUUGCAUAUUAUGGGUAUAACAUGAAGAUAUGAAUCAACAAUACAUGUCAUUCCCAUGUCCGAUACAUACAGGAUACAGCCAUAUGCAGCAUUCCAGUGUAUCUGGACAUGUCAUUCAAGUUUAGCAUUUAAAAUUAACAAAAUGAGAUACAGCAGACCCACCAUCUGCAUCUUAUAUAAAAAUCCACGAUUAGCCCAAUAUCAUAUUAAACCCAAAUCCCUCUGUGGAGUAUACUAGAAAACUUGAGAAAACUAAUGAGCAUUCUGGAGGAAAUGCAUAAUCAGAAAUUCAGAAAACCAUUUUAAGGUAUCCUAGGGUGAAACAUAUUAGUUGAAAAUUGAAGGGAAAUGCAGCAGAUGUCACAUGGAACAUGCAACUUGGGUGUGUUCCUCGUUCCGGAUCGAGGAACGGGAACUAUGUGGAACUUCAUCCCGAAAAUGGAUGGAACAUGGAUGGAACUUCAUCUCGAGAGUGGUCCCAGUACAAGAGACAAUAUUCAAUUAUAAUUGAACAAUGAGGAGUGUGCUUUGGACAUAAAUAAUUCAAAGACGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
5.69%
ME_num:
MEP:
61.99%
HE_num:
HEP:
32.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.70
Avg Expression:
13.98
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.67277257579028 | 0.000784527296310497 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.18154191736291 | 1.91191684969507e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.36278049069004 | 1.02348724756695e-06 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.97840004626518 | 0.000529657759642637 |
| 5 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.51976791542546 | 0.000763615839813065 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.85273890447828 | 0.023432407419976 |
| 7 | 9311 // leaf // control--/--9311 // leaf // salt | -1.2388201055785 | 0.017717236041199 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.1816004162527 | 8.76018546631627e-08 |
| 9 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.19790557807635 | 0.00206989456682267 |
| 10 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.19801482194512 | 0.00212698865870604 |
| 11 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.19807489709591 | 0.00207819236015507 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.52490976526717 | 3.44570275718893e-08 |
| 13 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.21386356926237 | 0.00803606663936229 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.15335427336358 | 2.0150478072754e-06 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.04987354991035 | 1.26829799729693e-05 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.58275169168451 | 0.000172325917298899 |