Chr:
Chr3
Start:
36207337
End:
36223410
Strand:
-
Ref_name:
OSA-LNCN4148
Sequence
(OSA-LNCN4148.1):
ACUCUCUCUGUUCUCCCGACGACGGCGGAGGCAGCGAGCGCGGCGGAGGAGGCAGCGGCGAGGCGAGGCGGCGGCGGAGGAGGCGGGGCAGCCCCACCGCCCCGCCGCAGCCUCCGGCCCCGUCGACUGCCCGUCCAAGAGUGGGGGAAGAGCCGCUCGCCGAGUGCCGUCGCAGCAGUUGCCGCCGCUCGCCGAGUUCUCUCUCUCAGGUGGCCAGCGAUGGAGGUGGACCUCGUUCGUGCAGGCGGCAAGGCAGAGUGAGCUCGAGUGGCCGGCGGUGGAGGCGGAGGUAGAGGCGGAGCGAGCUCGGGAAGCCACCGGCGGCAGCAGAGCCAGCGGCGGAGCGAGCUCAGGUGGUCAUUGUGGAGGUGGCGAGCUCUAGCGACCGACGGUGGAGGCGGAGGCAGAGCGCGCCGUCCACGCGGCCUCCGACGCGGCCGGACGGUGGAGACGUCGCUCGCUGUCGUUCACCGCGCCGCUGGCUUCUGCUAUUGUUCAAGUAUGCCGCUUGUGAUGUCGACGACUGGGUAGCAUUUGUCUAUGUCCAAGCUAUUUGGCUAGAGGAGCAAGAAGCAGAGCAGGAAGCCAAGGUCCUAGCUGGGGUAGGGGAUCGAGCAACCCCGCCGAGAUCUUCAACUUGGUCGGUUGGAAUACUAGUCCGUCCUCACCGUCGAGGAGCUACACGAGGAACAAAUUGAAGAAAAAAAUUCACUCGUUUUCUCUUCAGUUCAUGGCCGCAAAUUCCUUUUCUUGGUUAACACAUUACACUCUCUUGAUGUCUUCUUUAACAAAUGGAAAGAAAACGUCAUCUUCGAUCGGUUCUACUCUGCCCUCGUCGGAGGCGACAUCGCGUGCCCCACGCACGGGGAUCGACGGCCGACGCGCUCCACCAGCUCGAGAGGAACUCGAGGAGGUUGAGCGACAGUUCCGGCGGCUGGAGCUCCCUGGCGACGUGGAUUGAAUGACUAGACGAUGCGGCCGUGUGGCGGUGGCGGCAUAGGCCUCCCCUCCCUCGCCGUGCCCGCCCGCCGCCCGCAGCCGCCUCCACCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.41%
ME_num:
MEP:
22.56%
HE_num:
HEP:
76.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.74
Avg Expression:
67.65
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.45101250491732 | 7.68189308589589e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.58187529955703 | 1.11090001160943e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.38581002309299 | 2.55323084598693e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.98413022823449 | 8.82955543799366e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.54940451818363 | 6.69147401763194e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.48964454972295 | 7.37590174289307e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.61643331229386 | 1.54748061055737e-08 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.04492181732554 | 0.000479811512140156 |
| 9 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -2.40318348998882 | 0.00734985389911119 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.47592210950609 | 8.39251758237548e-07 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.27418942154764 | 1.88399875428649e-06 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.44576463009547 | 0.00527514057655516 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.82831053340875 | 6.09652075724277e-08 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.13240561232853 | 0.0048826021088281 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.52284723453307 | 9.33859969190555e-09 |