Chr:
Chr3
Start:
36173906
End:
36175830
Strand:
+
Ref_name:
OSA-LNCN4147
Sequence
(OSA-LNCN4147.1):
AAUGACUUCUAUGGCCAGCUCAAUACGCAGAGCUAUAAAAGGUAGUUUGUACAUCAGUCCAGUCUUGUAAAAUUAAAACUGCCAAGGUCCUGGAUAUCAAUGUGUGAGUACUAAUCUGGGGGUAUUUUUAGAAAUAUUUUGUAUUUACUGAAGUAUAUGAUAAAAUAUACUAUUAGGAGUAAAUAUGAAAAGAGAGAAUCCAUUAUAUACCACUGACUUUGUCAUACGUCUAUGAUUUGCCACUGACUUUAUCACGUUUUAUAAUGUGCCAUCGACUUUUGCUUAACUUCUACAAUUUACCAUCGCCGUCCGGUUAGUCCCCGUUAGUAAUGUACAAAUUUAUCAAAACGACCAAAAUACCCGUAGGACAAAACUUUUAAAAUUGGGAUAAAAUUUCUGAAAUAUAAGAUUUUAAGUUUUUGGCCAAAUUUUGGAUGUUUACACUCUUAUGUUUAUAAUAUGAUAUUUUGAAUUUUUUUAUCCAAAUUUUGGAAGUUUUUGUUCUAGGGGUAUUUCGGUCAUUUGGACAAAAUUGUACUGUACUAACGGAGGCUAACCGGACGGUGAUGGUAAAUCGUAGAGGUUAAGCAAAAGUCAAUGGUAUAUUGUAGAACGUGACAAAGUCGAUGGUAAAUCGUAGACGUGUGACAAAGUCAGUGGCAUAUAAUGGAUUAUCUCUUAUGAAAAACUGCUAGGAGUCAUAUGCCACGUGCAGGUUUCUUGAGGCGAGAAUUGUGUGGUGGGCGGUGGCCUGGAUGGAGAUCAUUAUCCUCUCACCCUGUGUCACUCUCUCGUUCUUUCUCUCCCAGCCGUCGUUUCUGUUCUCCCUCUCUGUAAGACUGCAACGCAGCGGUGUGGCAGCCGGCGGGAGAGCCACGGUUGGAGCAAAGCGAGGCGGAAGACGGGCGACCGAGGCAGGUGGGCGGGGAGCGAAGCGACGACUUCCUCCCCUCCCACACGCAUCCCGUCAUCUCCCUUGAUCCCCUCUUGCGUGGAUCCUCCCCUCUUGCGCGGAUCCUCCACCAGUGACUGGAUCUUGUCCUCUCUCUGGCCGCUAGCGGCGGCCGCGGCCUUCCCCACCGUGAGCAGCCACGGCGGCUCCCUCCACUACUUCCGAUGGGUGGAUCCGGCGGUGGCGGUGGCGGCGGCCGAGGGCGGAUCCGGCGGCAGUCGGUGGUGGUGGCGUCGGUGACGGCCGCGGCCUCUCUUCUGCCUUCGGUGGCGGUGGUGGCGUUGGGUGGAUCCGGCGGCAGCGGUGGCAGCGGCGAGUGGAUCCGGCGGCGAUGGCGGCAGCCGAGGGCGAUUCGGCAGCAGUCGGUGGUGGUGGCGUCAGUGAUGGCCGUAGGUGGAUCCGGCGGCGGUGGCGGCGGCCGAGGGUGGAUCCGGUCGCCUUUUUUUUCGCCCGAAUUUGUUUCUUUUUCGUGAAUUGGACAUUGGGAUCAAGUUCAUGAGCUUUACUCGGAUUAAAAUUGCUCUUUUAUGUUGUUUUUGGUUGUCUCAUUGUUUGAUUCAUUUGGGGAUCAAGAUGGGGGAUUUUUUUUUUAAAGAAUCGGACUCGAAUCCUAUGAGUGUUUUUGGUUGUCUCAUUGUUUGAUUUAUUUGGGGAUCAAGAUGGGGGAUUUUUUUUUUUUGAGGGAAUCGGACUCGACUCCUAUGAGGGACGACAGACGAAACGGAUGGUAUUUUUGAACAAAAAUCACGGGUGAAAAGGAGGUGAUGAUUGGAAAAAUAGGAAUCUUUUAAUUAGUUAAGAUAUAAUUUGAGUUGUUUUGUUGAUAGGUGUAGGUAUAAAUCGAAUUCUUAUAACUAGGUAUAUGCUCAUAAUUUGAAAAUUUAAAAAAAAAAUUGAGUGAUUUUGUGCAUUUGAUACCAUGGUGCCCGGGCACCAUGGUGUCCCAUAUGAGUGUCAUAUAUAUAUAUAUAUA
Sequence
(OSA-LNCN4147.2):
GGUUUCUUGAGGCGAGAAUUGUGUGGUGGGCGGUGGCCUGGAUGGAGAUCAUUAUCCUCUCACCCUGUGUCACUCUCUCGUUCUUUCUCUCCCAGCCGUCGUUUCUGUUCUCCCUCUCUGUAAGACUGCAACGCAGCGGUGUGGCAGCCGGCGGGAGAGCCACGGUUGGAGCAAAGCGAGGCGGAAGACGGGCGACCGAGGCAGGUGGGCGGGGAGCGAAGCGACGACUUCCUCCCCUCCCACACGCAUCCCGUCAUCUCCCUUGAUCCCCUCUUGCGUGGAUCCUCCCCUCUUGCGCGGAUCCUCCACCAGUGACUGGAUCUUGUCCUCUCUCUGGCCGCUAGCGGCGGCCGCGGCCUUCCCCACCGUGAGCAGCCACGGCGGCUCCCUCCACUACUUCCGAUGGGUGGAUCCGGCGGUGGCGGUGGCGGCGGCCGAGGGCGGAUCCGGCGGCAGUCGGUGGUGGUGGCGUCGGUGACGGCCGCGGCCUCUCUUCUGCCUUCGGUGGCGGUGGUGGCGUUGGGUGGAUCCGGCGGCAGCGGUGGCAGCGGCGAGUGGAUCCGGCGGCGGUGGCGGCGGCCGAGGGUGGAUCCGGUCGCCUUUUUUUUCGCCCGAAUUUGUUUCUUUUUCGUGAAUUGGACAUUGGGAUCAAGUUCAUGAGCUUUACUCGGAUUAAAAUUGCUCUUUUAUGUUGUUUUUGGUUGUCUCAUUGUUUGAUUCAUUUGGGGAUCAAGAUGGGGGAUUUUUUUUUUAAAGAAUCGGACUCGAAUCCUAUGAGUGUUUUUGGUUGUCUCAUUGUUUGAUUUAUUUGGGGAUCAAGAUGGGGGAUUUUUUUUUUUUGAGGGAAUCGGACUCGACUCCUAUGAGGGACGACAGACGAAACGGAUGGUAUUUUUGAACAAAAAUCACGGGUGAAAAGGAGGUGAUGAUUGGAAAAAUAGGAAUCUUUUAAUUAGUUAAGAUAUAAUUUGAGUUGUUUUGUUGAUAGGUGUAGGUAUAAAUCGAAUUCUUAUAACUAGGUAUAUGCUCAUAAUUUGAAAAUUUAAAAAAAAAAUUGAGUGAUUUUGUGCAUUUGAUACCAUGGUGCCCGGGCACCAUGGUGUCCCAUAUGAGUGUCAUAUAUAUAUAUAUAUA
Sequence
(OSA-LNCN4147.3):
UCUGUUCUCCCUCUCUGUAAGACUGCAACGCAGCGGUGUGGCAGCCGGCGGGAGAGCCACGGUUGGAGCAAAGCGAGGCGGAAGACGGGCGACCGAGGCAGGUGGGCGGGGAGCGAAGCGACGACUUCCUCCCCUCCCACACGCAUCCCGUCAUCUCCCUUGAUCCCCUCUUGCGUGGAUCCUCCCCUCUUGCGCGGAUCCUCCACCAGUGACUGGAUCUUGUCCUCUCUCUGGCCGCUAGCGGCGGCCGCGGCCUUCCCCACCGUGAGCAGCCACGGCGGCUCCCUCCACUACUUCCGAUGGGUGGAUCCGGCGGUGGCGGUGGCGGCGGCCGAGGGCGGAUCCGGCGGCAGUCGGUGGUGGUGGCGUCGGUGACGGCCGCGGCCUCUCUUCUGCCUUCGGUGGCGGUGGUGGCGUUGGGUGGAUCCGGCGGCGGUGGCGGCGGCCGAGGGUGGAUCCGGUCGCCUUUUUUUUCGCCCGAAUUUGUUUCUUUUUCGUGAAUUGGACAUUGGGAUCAAGUUCAUGAGCUUUACUCGGAUUAAAAUUGCUCUUUUAUGUUGUUUUUGGUUGUCUCAUUGUUUGAUUCAUUUGGGGAUCAAGAUGGGGGAUUUUUUUUUUAAAGAAUCGGACUCGAAUCCUAUGAGUGUUUUUGGUUGUCUCAUUGUUUGAUUUAUUUGGGGAUCAAGAUGGGGGAUUUUUUUUUUUUGAGGGAAUCGGACUCGACUCCUAUGAGGGACGACAGACGAAACGGAUGGUAUUUUUGAACAAAAAUCACGGGUGAAAAGGAGGUGAUGAUUGGAAAAAUAGGAAUCUUUUAAUUAGUUAAGAUAUAAUUUGAGUUGUUUUGUUGAUAGGUGUAGGUAUAAAUCGAAUUCUUAUAACUAGGUAUAUGCUCAUAAUUUGAAAAUUUAAAAAAAAAAUUGAGUGAUUUUGUGCAUUUGAUACCAUGGUGCCCGGGCACCAUGGUGUCCCAUAUGAGUGUCAUAUAUAUAUAUAUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
27.85%
HE_num:
HEP:
71.95%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.76
Avg Expression:
30.19
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.26223217931314 | 0.000243450734450362 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.4864026211224 | 9.40620094696204e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.42198780820978 | 2.32401282307152e-07 |
| 4 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.08628154032259 | 0.0378233272618459 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.03253162173274 | 1.00213169544583e-27 |
| 6 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.0355839823966 | 0.00197557025358375 |
| 7 | 9311 // leaf // control--/--9311 // leaf // salt | 1.93845077456631 | 1.50010835361159e-28 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.07257979040793 | 9.09970817971619e-05 |
| 9 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.44985636397372 | 1.22069521352562e-13 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.00351096270561 | 9.71149207973331e-05 |