Chr:
Chr3
Start:
35753875
End:
35754785
Strand:
-
Ref_name:
OSA-LNCN4141
Sequence
(OSA-LNCN4141.1):
GUACCCAUCCCACUGCGAUGGCCGGUGACACGUGUGAGAACAUGGCAGCAGUGGCAGUAAACCUGUGGGACCCAUGCCGACAGCAGCUACAGGUAAAAAGGAGCUAGUAGAACGCGAUGAGUCACCAGGUCUAGACUAGUUACAUCAUGUGGAGAAGAAGGGAAUUAGCUGCUGGUGUUAACAAGUGUGAUUAGUAGUAAUAGUGUUUACAUGGGGAGAGGGGAAAGACAAAAGUGGUUGGGAGAAAGGGGAGAAGAUGGGAGCAAGAAAGCAGGUGUCAAUGGCGAGCAUUAGCAUAGAGGCAGGACCGUGUCUUUGUGUUGUAAUCUAGACUGACUAGCAUAUUGAAGCAAUAAAAAAAAUGGCAAAUAUGUGCAUACCUGGACGGGGGCGGGAGCCGGAGCAGCAACGACGGUGACGUUGGCGUCGACGGCGGCGUCCUGCAACGGGAGCGGCAGCGGCGGCGCGUCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.81%
ME_num:
MEP:
59.35%
HE_num:
HEP:
14.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.78
Avg Expression:
8.80
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.697498428212 | 0.000283224797704112 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.0940498631544 | 1.68408885675634e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.53090796617923 | 2.67144430360182e-17 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 6.18788203263453 | 0.00302194163847594 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 6.18778644280782 | 0.00305445234460856 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 6.18770554703189 | 0.00303161019216557 |