Chr:
Chr3
Start:
35619159
End:
35620173
Strand:
.
Ref_name:
OSA-LNCN4140
Sequence
(OSA-LNCN4140.1):
UCUACGUUUGCAUUACAUAUAAGGUUUGCACUACAUAUUUUUUCCCUAUAAUACUUAUUAGGGUUAGUAAUGUUUUUACUUCUAUAUAUUUUAAACAUCACUCUCAGUAUGUUCAUAGUAAUAUACUUACUCAAUCUGUCCGUAAAAAAGUGAGUGAAAAUUUUUAAGCCAUCAACAUACUAGUAUCAUUAUCCUUUUAUGGGGCAUAUUUUGACACAUACAGUCAAUAUUAGAUUAUGGAGUAUUACGUUUAAUCAUAUGCAUAUCAAUCGUACAAAAAAUCACCCGUGCGUAACAAACUACAGAACCAACAAAGAGAAAAAAAGGAAACGGAACCCCCGUCCACGGGAGGAUAGAAACAGCAGAGAUACGGAUGACCCGAGAAGCACGCCGUACGUGGUGGUGCUGCAUGCGCUAGGCUCCCUCCAGAUCCAGCGCAGCAACCAGCGUCUACAUCGGCCUCUUGCCCUAUACGCAUCGACGCUGGCCUGGAAGCUAAUCGCCGGGCCUGAAGACCGUCGCCGCCGCACAAGGUGGAAAGCAACCUUCCCCUCCAUUCCAGCUUGAACGUUGUUUCAGGGCCACCACUGCCACUGGCCGCCUACUCGUGUGCUCCCUGAACCGUGCUCCCUGAACCGACCAUGAGGCACGCCAUGGACGACGUAGCCGGCCGCCGCCACCCUCACGGGCUCCGAAGAAUGACCACCGGCGCCGGCCUUCAGAUCGGGCACCUUCAAGAGGGAGGCAGCCCGACGCCACCAAUCGCCCUCUCCUACCUGGAUGCAUGACGACACCACCCCUCACCGAUGGAUCUCCUCGCCACCACUCGGGGCUCGGCCUCCACGCCAUCGCCCCAACGAGCAGACCGGUCACCCGUCGCCGCUCUAUCCCCAAUUUCUCAGAUCCGAAAAAAAUGAAAGAGGACGGGAGUAUGAAUGGGGGUUUGGAUACGGUGAGAUGGUUAUGGAUGAUAUAAAUAGAAUUAUUGGCGUGAGUAAAAAAAUUACUAUUGUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
68.29%
ME_num:
MEP:
27.44%
HE_num:
HEP:
4.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.87
Avg Expression:
14.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.41776405993504 | 0.00709258738306923 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.37681389555257 | 0.0248361040449242 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.62558091330317 | 0.010344539337896 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.83124651173535 | 0.0296875938824187 |
| 5 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -3.51712329530516 | 0.000265194626379858 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.19159262963442 | 0.0016103587515278 |
| 7 | 9L136 // leaf // control--/--9L136 // leaf // salt | -2.56370308363403 | 0.0437237387062452 |