Chr:
Chr3
Start:
35417995
End:
35419110
Strand:
.
Ref_name:
OSA-LNCN4137
Sequence
(OSA-LNCN4137.1):
GACAUGGAUCAAAUCGGAUUGGAAAGGAAGGAUAUAGGACCGAAUCGGAGAGCGUUUCGGAUUCUUUCUCCUCCUUAUAUACUACUGGUCCGCAGCCAAGGCGCCACUUCGAUCGGAAAUAAGAGAUCGAUCAGACGCCACCAGAAUUAUAUAUAUUGUGCGAAGAAAUUUGAUCAGUCCAGUUAUCAUAUUCGAAAAAAAGUAGUAAUAAUCUGUUCUGCCCGAUCCAUGGGUGCUCUCGUGUCUCGAGCUGCCGCUGCCAUGCUAGGCGAUGCCUCGGAUGAAGCGGAGUUGAGGAGAUGGAUGGAGGAGGAUGCUAGACGUCAGGCCAGGAAGAGGAAGAUUAUCUGUGCACCCGCCCGCUACCAUCCGAGGAGUACGUAUAAAUUGAAAUUGAUCUGAAUAGUACCGGCUUAAAUAGGAUGGCAACGGGGCGGGGCGGGGACGGGUUGGAUAAGAACACCCCCGCCCCCCCUCCCUGCAUUUGCCCCCCGCCCCCGGCCCCGCAGGGCCACCUGGGUGAAAAGGACCCGGCGGGUGAGCGGGCGCUCACCCCCGCAUCACCCGGGGUGCACAAGGCUGCCAAUGUUGAACGGCAACUCAGAAAGAAUGAAAGAUGGCAUGGGGUGUAACUACUCCACUACUCCAGUCAGUAAUCAAUAUAUCACAAAUGCACAAUUAGUAGUAAUAUGCAUUCUAGGGAGCCGGAUGCCCAAAUACACAUAAACACAAGUACUAAUGUAGUUAAGUCCUAUGUAUGACAAAUACACAACAACCAACUCACAAGCAAAGCAGCAGCCAGCCAAUUAGCAGUAUACUAGUAGCUUUGCUCGAGGUUGAGGAGCUGGCCGCAGGAGUCAAGCUUUGCUCGAGAUUGAGGAGCUGGUCGCAGGAGUCAAGCACUCGGACAGUCGGACGGCAUGCCUGCAACGCGCGGCGAUGGCGCUCCACUCCGGCUCGAUGUUGCGGGCUCCGGCGCUCUGGUCGCCAGCGUCGCGCUCCGCUUCGCCGCCACGCCGCCGCCGCACGCAAUGGGCGCCCGGGAGCUACCAAACUAAUUUAGGGUUAGGUAUUCUUCAGAUUUUUCUUUUAUACUAUGCUGGUUGGGCUGUUGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.9%
ME_num:
MEP:
49.39%
HE_num:
HEP:
31.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.76
Avg Expression:
12.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.01244475093962 | 0.0212513471518027 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.21688038445209 | 0.0178310713584801 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.27908027513306 | 0.00692697719941659 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.12200464564549 | 0.00352909389029105 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.28598063232903 | 0.00859360338638626 |
| 6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.40491424165734 | 7.09330069634482e-07 |