Chr:
Chr3
Start:
34469293
End:
34473361
Strand:
-
Ref_name:
OSA-LNCN4126
Sequence
(OSA-LNCN4126.1):
AGUGCAAAAAAGAGAGAGAGAAGGGGGGCAAAAUUUGCAUUUUAGACGGGCCUAGCUAAAAAGGCCAAGCCCACCAAUAUUGUUCCCUUUGACCCAUAAAACUAUGGGCCAUAGCCCUUCUGUGCCCCCGGGCCGCCACUCCUACUUAGCAGCAACCCCUCUCCGCCGCCUAAACCCUAGCGCCGCCGCCGCCGCCGUCGCCAUCGCCGUUCUCACACUCCGUCGGCGUAAGCUCACAGGGACGGUAAGAUGGCGCCGCCGCCGGCGAAGGGCGGCGCUGUUUGUUGGUCUGAGAUCCAUCGGCUACGGCUUAAUGGCUAUGACUAUUGGGAUCUGUAAAUGAUCUGCAGAUCUGCUGGAGCUUCUGACAAGAAAAAUGAAACAGUGCAACUUCGUGUGAAGACAUGCGAGAUGCGACCACUAUGGUUGAAAAAAAGACAUUGAACUUCGGUAACCAGGAAAUCGAAAGGCAUGACGCAUCAGUAUUAGUUUUUGGAAAUUGCAUGAACCCACAUGUUUACACUCAUGGAAUUUAAUUACAGGGACUGAUUUUUGUCAAAACAUUGUAUGGUUAACCCCCAGCAGUGUACUUUAGUAUUCCGGAGCUGCAUGAUAGAAAUUAAGCUAACUUCUGCCCUUAUUAGUAUUACCUCCGAAUGCAUUUGGCACUUUGGCAUUGGCAUGUUGUAAGGAGUGCGGUUAUCGAUCCUGGAACAAACAGAACACGGUCAGUGGCUCGUCUCGUCCACUCGCCACUUCUAAUCAACAUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
8.33%
ME_num:
MEP:
58.74%
HE_num:
HEP:
32.72%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.68
Avg Expression:
14.98
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.36836838107723 | 2.16428817416903e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.63732519293767 | 1.72002257949526e-16 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.4868486503 | 3.8006378496866e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.4322380770554 | 4.81277648182492e-19 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.43388403027694 | 8.91979955496665e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.598649545155 | 2.43611660290622e-27 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.06505367989459 | 4.36700036810869e-09 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.36368422771577 | 5.10512055318769e-05 |
| 9 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 1.49939986143043 | 0.0183445035671939 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 4.34784033638844 | 8.30689495770681e-13 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.1885272994236 | 9.6257195783182e-08 |
| 12 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.82919194082468 | 0.000982886532027919 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.31624711374033 | 4.53253151395932e-13 |