Chr:
Chr3
Start:
34422151
End:
34423459
Strand:
.
Ref_name:
OSA-LNCN4123
Sequence
(OSA-LNCN4123.1):
AUAUCUAGUCUCACAUGUCAUAGAUACACUGCGUCUUGGAGUCCGUGCUACAGCUGGAUAUAAAUCUGUAGCCCGCUGCUAUUCUCUCUCCUGAUUUAUAUUUUAAAUCAGGAUAGAGACGCCGAUGCUGAUCCAUGUGAUGUCCUUAUCCAUUUAUCUAGUUUCUGUAGUUAUGAUCAUGAAGCUCAUGUCCGGCGCCUAAGAAUUUUUAGUACGCGUUCAGACUCCUGCCCACUUGGGGCACACGUAAAUUUGAGCAAAAGAAAGAGCACUAACAACCGUUGCCAUGACAUCACUGCAAAUCUAAUGCUCCCUCUAGAGGUUGUUGCCGGUUCGUUCUUCGAAGUACUGUUGACCAAGGCAGGCGGCCUCCCGGAACCAGCAUAAACAAAACCAGAGAUCGAUGUUCUGUAUUCCCAGAAAAAAAAAGAAAAAAAAGGCCAGGUUCUCCGUACCCAACCCCCAACUCUCUAGAAAUUCAAUGCAGGGAAAAAAAAGAUAAAAAGUCGUGGCAUCAGAUACGAACCAACAUGAUGCAACCGAGUAGUACUAGUAGCCAGUAGGACCAAACUCCGCUGACUAGUACGAGCAGUUUCCACUAGCAAGCGGCAACACCGGUUACACAUCAUCGCGCAACGCGCACGCGACGCAACGACAGGAACCACCGCUCCUUGCGCGCGAGGCAAACGGAAGCCGCGCGCCCGUGCGGCUUGGACUAGUACGCUUGUGGGGAAAAUGGAGAACGUGAGAAUAUCGCGGUAGAUUCUGCCAUUUUUCCUCACGAUUCGGCCGUGCUGCCAAUCUCAUCGCCGCGUCGCAGCGCGCCGCGCUGGGGUUAAGCCGGCCUGAUGCCCGCCUGCCGUUGAUGGGCGUAAGCCGCUAGCUGUCACCGACCGGGGGCGUACGUAAUUACGUGCGUGCGUGGAGUGGAUCGCGCGGCGGCCGGCCUCCGCGAAAGGCGCGGCUCGGUUAAUCGCACGCGCCCUCCCGUUCCGACUUCCCGUACGUGUGUGGUGGGACGGAAUUCACAUCACGGUCACAGGUCAUACGUACAGUUUCUACACAGCUCUACAGGUCUGAGAGGAAAUCGAGACUGUACAUGCAUCGCGAUGUAUAUACGUUUGACUAUCCCCGGCCGCACAAAACGGAGACAGGUUUACAACUGUGUCUAUGGUCUGGAUUCACGGUUCACCGUAACAAAUAGUAAAACCAAUACUAGUACUCCAUAAAAGUACUGCAGUAGACCGGGUUCAAAUGUUCUGGAUGGUCACGGUCGAUUGACCACUAUAGGUGCUUUAAUUAAUUAGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
91.26%
ME_num:
MEP:
8.54%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.96
Avg Expression:
1.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 3.70245100400818 | 2.94851670774381e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 3.88541301429029 | 5.1649826062685e-06 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.31728705827337 | 1.72809243548884e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.42395286319027 | 2.19811164784119e-08 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 8.53722882402549 | 4.82546031144466e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 3.08110429110152 | 0.00482803646296867 |