Chr:
Chr3
Start:
32798364
End:
32800139
Strand:
+
Ref_name:
OSA-LNCN4092
Sequence
(OSA-LNCN4092.1):
AGCGCCAGGCCGCGGCGUCGGCGCCGGCGCAGCCUCCGGCGGUGCCGUCGCCGAUGAUGGCCGCCGGCAUGCUGCUGUCGCCGGGCUUCGUCUUCUCCCCGAACACCAUGCAGUCCAUCCAGGAGCUCAGCCCCUUGUUCUAAAUCAAACCAAAUGUUAUCAUUUGAGAAAUAGGCCUGGCUGUGAAUUUCGGUGCAAAUUUGACAGGCUAUUUCAGGAUAACAAUGGAGCAGCUACGAGGGAAAACAAUGACAAACGAAACAUAAGAAGUGCAGUCUGCAGUUCAGCAACAUUCCUAUUCUGAGUGCAUUGAUCAUAUCACACAAUCACAAAGCAUAGAGAAAAUCCCCUAUGUACCCAUGAAAGUUCAUCUAAUUCCUUCUAUACCCCUGAAUUUUGCUCAAUCCCUUACAUACCCCUGAAUUUUAGUUUGGAUCCCUUCCAUACCCUUUCCGCUAGUUGACCGUUAGUUGACCGUUAAAUUCUUUUGAAAAAGUCCAUUUUGCCCUUUGCUAUGAAGAAACAUAAUAAAUUAAUGAAGUAUAUUGUUGGAAUGUAAAAAUUUAUUGGAUGAGACUAUUAUAUUUAUGAGUAUGUGAUGCACCAUAUUAUUUGUGACAAAUUUACUUUUACAUAUGAUAUAAAAAGUUGAUACUUAUUUAUUAGUUAUUAAAAGUUCUUUUAUGUAGCAUAUGUGUUUUCAUAGUAAUACAACAUAUUUGUUUAUUACUUCAGAACACAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
61.99%
ME_num:
MEP:
36.79%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.80
Avg Expression:
1.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64NIL // root // control--/--IR64NIL // root // Al | -2.40082800413369 | 0.0123031536353694 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 1.67256368440519 | 0.0393898487519397 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.79377311934954 | 0.000841195561882229 |