Chr:
Chr3
Start:
32638866
End:
32639531
Strand:
.
Ref_name:
OSA-LNCN4089
Sequence
(OSA-LNCN4089.1):
CCCUUCUCCUCUCCCAUUCCUCUCCCUUCUCUUCUCUUCCUCCUCCUCCUCCUCCUACCAUGUGAGGCCGGGCGGCGCGCGGCGGUAAGGAGGGCGCGGAGCGGCGGGCGGCCGGGCAGGCGGCCUGCGAGGCCGGCUGCGGGCGGCCGAGGCGGCGGCCCGCGAGGCAGGCGAGGCAAGCGGCCAGCGAGGCCCGAGGCGGGCGGCCGAGCAGACGGCCAGUGAGGCGGCGACACUCCCCUGGCGGGCGGUGGAGCUCGAGGCGGCAGCGGGCAGGCACCGGCCGCCGAGGCGGCGGGCGGCGGGCGGCGACGCUCCCCAGGCGGCGGCAGAGCCCGAGGCGGCCGGGCGGGAGGCUGGCGAGGCGGUGGACGGCCGGCACCCGAUCUCUGCGAUGUGGUUUUUUCCUGAUCUGUGCGAUGUGUGCGGCCGAUCUGUGUGAUGUGGAUUUCUUUUUCUGAUGGCCGAUCUGUGCGAUGUGAUUUCUUUUUCUGAUCUGUGUGAUGUGUGAUGUGUGAAUGAAUUUGUAGAGAUGAUUUUGUGAUUUUGUGAAUGAUUUGUGAUGUAUUUGGAGAUAGAAAAUGCAGCUUGAUGUAUUUAGGGAUUUUGUGAAUGAUCUGUGGUGUUCGAAUGAUCUGUGGAUAAUAUGAAUGAUUUGUGGGGCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
80.89%
ME_num:
MEP:
15.45%
HE_num:
HEP:
3.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.82
Avg Expression:
1.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.31585789358389 | 0.0408716592870573 |
| 2 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 3.03133767220056 | 0.00438811393938192 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.40062579316032 | 0.0366350230661836 |
| 4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.35350704366171 | 0.0334279767180713 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.62365984943813 | 0.0154372436859302 |