Chr:
Chr3
Start:
32634691
End:
32635561
Strand:
.
Ref_name:
OSA-LNCN4088
Sequence
(OSA-LNCN4088.1):
UUCUCAACUUCUGUGAAAUUCUUAGGGAUUGACUUGAUGCAAAUAGAUUUUGGAGGAAAGUUAGUUAAAGCUCUAACCUCUUAGAAAUUUCCUUAAAGCCUAUUUCUCUUAUUCGAUCUCUACGUUUUUUAUGGUCUAUUCAAAUAAUCAUUCAUGUGUGUUUUGUGACUUGCAUUCCUACUAAAAUCAUUGUUUUCAAUUUCUUUUUUUCUCAAUCCUGUGAUUGAAAUGAACGGUUCAAAGGGAAAUUCCUCCAUUCAAAAGAAGUAAAGCCUUACUGUGCAGUAUGCACUAUUACUAGGCCCCAUUGUCUCCAUAUUUUUUGCUUAUCAAUAGCUGCUGCUAGAGAGAUUAUUAUACUGUCACCCUCACCUCCUGCUAUUUGGUUGGUGAUGUUCUUCUUUUCAUCAGCCUGUUAGUGGGACCCCCCAACCUACAACAUUUUCUACUUAUACAUAGUACUACUACUUCGUCACUUCCAUCAGAGAUGAAAAGAGAAUAGAAAAGGCACCAUCAGUUAAAAAAAAGGCAUAAAAAGGGGGAAAGAGAGGAUUGGAUCGGAUUCGAAAUCAAAGUUUGGUGUGAUGGGUGGUUGAACAAAAUCUAACUGAAAAUCCAGUGAGACCCAUUUGACAGGAAGGGGAAUAAAUUUAUUAGUUUGGACCACGCUCACACUUGCAGGAUGACAUGAAUGUUCUGUUCCUUUGCAACUUGGAGGAAUUAUAUGUUCAACAGUUCAAGGCACGCAUGUGUGUAUAGUAAUGUAUUCCAGGAAAAUACAAACCAGCAGAUUGAGUCAUAUAAAUUCAUAUAUAUCAGUCAUGUCUCUAUCCUGCAAUGUUGCCCUUUUGUCUGUAUUUUUUUAUAGUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
98.17%
ME_num:
MEP:
0.81%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
1.00
Avg Expression:
0.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.52299572257245 | 0.04039899957442 |
2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 8.45023904296921 | 1.66727291453241e-06 |
3 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 8.33825228678939 | 1.73765316285587e-06 |