Chr:
Chr3
Start:
32583226
End:
32584114
Strand:
+
Ref_name:
OSA-LNCN4083
Sequence
(OSA-LNCN4083.1):
CUCAAGGGAUGCCUAGUGGGGGAACCAAGGCGGCAUUAUCAUCAAUUUUGCAGAAGUACAAGGUCCUGAUAAACAGAAAAACUGGUUUGCUAAAUAGUAAACUUACGAGUAACUGCUAUACUGGAUAGGAUUCUAACACAAACUACUAAGCAUCCACCAAGUCAAAGUCAUCGCAACACGGAUUAGGUGAUCUGAUCCUGAUGCGUGCUCACAUUCCUACCCUUACAGUUGAUCUAGCCACCCAUCUAGGUGAGAAUUUCAGAUCAUUUUGACACAAUCUCCUAGCAUUAAAGCAGCUCAAGUUGAGAUAAUCAAUCCCCUCGAGGUCUCAACCUAACCAAAUCCACACAGACUAGCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
58.94%
ME_num:
MEP:
34.35%
HE_num:
HEP:
6.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.97
Avg Expression:
15.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.51459174045697 | 4.67760735352768e-13 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.89437350275808 | 3.01848445418176e-16 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.22056740869608 | 3.90533133828918e-18 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.44683904042316 | 5.58505325201853e-09 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.87938885244944 | 7.39443066464742e-13 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.06883885959855 | 7.59784941189402e-09 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.51073844084202 | 1.45472979022688e-16 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.66406050041126 | 4.22683679529356e-18 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.21663998532667 | 2.16459008745112e-13 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.07121178082567 | 1.24488566035424e-08 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.09706998482297 | 3.78603139161587e-13 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.78571193092399 | 3.55872170744483e-15 |
| 13 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 3.63273214939772 | 0.0104227524127552 |
| 14 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 3.6326671072724 | 0.0105386266249377 |
| 15 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 3.63249847234108 | 0.0104551382431353 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.7338074132937 | 1.08215978979223e-14 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.24126801158645 | 7.73488672157994e-18 |