Chr:
Chr3
Start:
32578023
End:
32581454
Strand:
+
Ref_name:
OSA-LNCN4082
Sequence
(OSA-LNCN4082.1):
UGCGGAUAUGCGGCCCAGCUGAGCAACCAGCCUCCGCCCCCCUAAACCCCAGGAGGCGGCACCGCCGCGGCGGCGGCGGCGGCGCUGAGCUCUGCUCCCCUCAUCGGCGCAUCCCCAUCCGCUCUCAGAUCACUGCGCGCUCGAAGCCUGAGAUUUUCUUUAGCUCCUUAGCCGCGUGUUGCUGCUGGUGCCACGCGUCUUGAUGUUUCUGUAUGUAGCCGUAGAAUCUUGAUGCGGGUUGUGUAAUGUUCGAAGAUGGAUCUAGGAGUAUGGCCGGAUAUGAUGCGAUUGUUUCGUUGUGCUUUAGUUUAGAGAAAUGGUGUAUUUGUAGACGGUUGCUAGUAUCAGUAUGAUUGAGAAUGUAAACCUUUGAUAUCAAGCAACGUUAUACCUACUGUGGCAAUGUUCUUGCUUGUAUUGCCAUGUUUAAUCGCGUAGUUUCUUUGUGUCAAAUUAUAUGUAGCAUAAUUUGUGGAGGUUGGGUAAAGUGAUCUUUGCGAACGUUUUGUACUGAUGAAUUUUCUGGGUUGAAAGAUGGGCAUGGUCUUACCCAAAAUACCUGAGCAAAGGGCUACAGGUGUUCGCGGAGAUUGGUUGUGCUUGCUUUGAAAUCAAUUGAACUGUAACCUGUUGAAUGUCGAUUGCGGUCUUGCAGAUCAUAUGCAUGGAUGGUGCAUUUGCAUCCUGUGCUUUUAGCAUGAAUUCUAGGAAGGUAACUGCUGUGAUUAGGAUGUUGUAAUUUCAACAUUCUCUCCCAGUUUUCACUUUUCAGUGAACUGACAUUUCAUUUUCGCCUAAUCAGGGAGGAUAUCCCAGCCCCAGUUCAGGUAGCUGCUCCAGUUCUUGGAGACAAUGGAGAGCCCAGCUUGUGAUGAAGAAGACGGGUGCUAAACUGCUCAUGAUGACCUUGUCAAGGGUCUCCGUGAGGCUUGCUAAAGCUGUUUUUUCGAACGGUCAAGCCAUUGC
Sequence
(OSA-LNCN4082.2):
CGGCGGCGGCGCUGAGCUCUGCUCCCCUCAUCGGCGCAUCCCCAUCCGCUCUCAGAUCACUGCGCGCUCGAAGCCUGAGAUUUUCUUUAGCUCCUUAGCCGCGUGUUGCUGCUGGUGCCACGCGUCUUGAUGUUUCUGUAUGUAGCCGUAGAAUCUUGAUGCGGGUUGUGUAAUGUUCGAAGAUGGAUCUAGGAGUAUGGCCGGAUAUGAUGCGAUUGUUUCGUUGUGCUUUAGUUUAGAGAAAUGGUGUAUUUGUAGACGGUUGCUAGUAUCAGUAUGAUUGAGAAUGUAAACCUUUGAUAUCAAGCAACGUUAUACCUACUGUGGCAAUGUUCUUGCUUGUAUUGCCAUGUUUAAUCGCGUAGUUUCUUUGUGUCAAAUUAUAUGUAGCAUAAUUUGUGGAGGUUGGGUAAAGUGAUCUUUGCGAACGUUUUGUACUGAUGAAUUUUCUGGGUUGAAAGAUGGGCAUGGUCUUACCCAAAAUACCUGAGCAAAGGGCUACAGGUGUUCGCGGAGAUUGGUUGUGCUUGCUUUGAAAUCAAUUGAACUGUAACCUGUUGAAUGUCGAUUGCGGUCUUGCAGAUCAUAUGCAUGGAUGGUGCAUUUGCAUCCUGUGCUUUUAGCAUGAAUUCUAGGAAGGGAGGAUAUCCCAGCCCCAGUUCAGGUAGCUGCUCCAGUUCUUGGAGACAAUGGAGAGCCCAGCUUGUGAUGAAGAAGACGGGUGCUAAACUGCUCAUGAUGACCUUGUCAAGGGUCUCCGUGAGGCUUGCUAAAGCUGUUUUUUCGAACGCUUUGCAAAAUUGAUUCAUGUGUAAGGCUAGAGAGGUGGUCGGCUGCUCAUGUGUCGUCGUGAAGGACUAUGGUGAAGGAAUCAGAAUGCUUUAACAUCGGAAUAUGUCAAGUCACACUAGGGACAGCUCUCAAGUAUCUGGAGUUUUCAAGAUGCUUUUUGUCCCUCAUUUAAAUUUGUAUGAAGUCUUGGAAAUGAUUAGAUUAUGAAAAAUUUUCAUCUCUGAGGAUGCCAACUGAAGAUCUUGUUUCUGGUGUUCUUGGCAUCAUGGUCUAAUUACCAGAAAUGAAGAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
43.29%
ME_num:
MEP:
49.59%
HE_num:
HEP:
6.91%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.83
Avg Expression:
9.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.18389021753458 | 0.0211931520526421 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.66397741160348 | 0.00544233903620565 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.54555241585544 | 0.00198622449763344 |