RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN4077

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

32453535

End:

32486065

Strand:

-

Ref_name:

OSA-LNCN4077

Sequence
(OSA-LNCN4077.1):

AGUUCUUAGAAAAAGAAAAUAUUUGCAGUUCUUUUGGCAGAGUAUUCAUAUGCAGCUAUUCGGGUGUUUGAGAAAUUAAAAUAGCAUGAAAAUGCCCAAUUAGCCAUGCCCAAAAGGAAAACGAGCACAAAAUAAAAGGAGCAACGGUUACUGUAAUUUCAACAAUGCUAGCUCUUUUCUGAAACUUUUUUCAUCAAUUCGAUCCUAUACCAACUCUGCUUAAACUCUUCUUCGAUCUCUGACAACUAAUGACAACUAACAUGCAGCCAACAGGCCAGCCAUCUUCUCUAUAUAUACAUGGCCUCAUUCAUGGCUGCUUCUCACCUUAUCCUCUGAAUCUGAUUCAUCAAAUACCUUGUCUAAUGCCUGAUAACUGAGAAGUGAGAGAAGAAGACGCUGUCGUGUUGUACACUGAUAGAACAACAAGCUGUGAUGUGCUUGAGUGUAGCUGGGUGAGAAAUGUUUGAGAAUUGCAUUGCCCUCCUACUAGGAGUGGAAGGCAUCCAGAUAAUUUCUAAGAAAGGAGCUGCACAUGGGAUGUACGUGGCUAUAUUGGUACUAGCUAGGUUAACAAGUGGGACAUGAUUUCAUCGUCCGGGUUCUCCUCUCAAAUUAUGUCCUCUGCAUCGAAGCAUUCAAUGUCAUCGUCGUCAAGGCUCUCAUCAUCAACCAAACUCAAAAAUUUUCCCCAACUAAACAAGGCCACAGUAUAUAUACAUAGGGUCCAAAGACAACUAGGCAGGUGCUAGAUGUGAAGUUGAAUAACUGAUAGUAUAUGCACAACCACGAUCAACAUUGUGUUGACACGCAAUCAAAAUUAUAUGGGGGCAAAACAUAAAAGGUAGCGACCCAAAGUAGGGGUAAAAUGCAGAAUAAUUCGAUGAUUAGAUGAGGCUGCACAUGGGAUCGAUGUUACAUGGCUAUAUUGGUACUAGAUUUCAUCGUCCGGGUUUCCAAACAGAUUAUGUCUUCUGCAUCAAAGCAUUCAAUGUUAUCGUCGUCGAGGCUCUCACAAUCAUCAUCAUCAUCAUCCAGGUGUUGGAGAAAUUAAACGGGCCCCUCCAGGGCCUGAAAAUUCCCAGCCCAAUUGACUAGGCCCAAAGAGCAAACGAGUCCAAGCGCAGCCCAAAAGGAAAAAAGAAGAAAGGCUCAAGAUUUUCUGAAAUGCAGGUAUUAUAUAUAUUUUCUUGGACUAGCAUCAUAUUCGUUCGUUAUCGUUGCAACUUAUUACAUUAAAUAUGUUAUAAGUAUGAAAUAUAAGGUAAAUUAAUUGAUGAAUUAUUUCUAAAUUUAUAAAACCUAUAUACAUAAUUAUAUGACACCAACUGACCACCUUCAUACACUCAUAUAUAUAUAUAUAUGCCAAAUGACCAACAACUACAAAUAAACCCUACAGAUAAGAUAUACAGUCCUAUAUUAUAUAGGGCUGAACAAUCUACCAUCUCAUCUCGAACUCUCUAAGAUGGGCAAGACAAAAUUAAGAAUUAAGAGAGCACUCCAUCAAACGCCAAGGAUCUGAAACUAAUACAUACAUAUACACAUGCAUAAUUGCGUAAUCAAUUGGCAUGCAUGAUCAGUCACUUGAAAUCAAGAUAUAAGACCAUGAUAUCAAUCGUACACACAGGUCAGCUCAUGCAUCUACCAUAAUCUAACCUCUCCUAAUCAGAUCAAGAUAGAAAACCAUGACAACAAUUGUAUAUGCAUGCAUUUAUGUCAGCAGUCAGCACUACCAUGCAUCAGAAAAAGGUGGCAAACAGUACAUGAAACAAACUAGCUAGGCUGUCAAUAAUUUUUUUCAGAGAAGUUGCUCACCAAGUGACUGCAUGCAGAUGUGUAAUCAACCAGAGAACUAUUAGUACACACUAUAUACACAGGUUUGCUCACUUACUGCAAAUCAUGACAGCGUCACACACAAGCGAAAAAUAAAAUGCAUGCAAUAUGUAUUAAGCAUAACUACUCAUCAAACUAAUAAGAAACCAUAACCAAGCGCAUAACUAAUUAAAAGAGACUAAUUGUAAUAAGAACUAAUAAGACUACUAAAACUGCAGUAUAAACUACCGUAUGAUCCAUGUUUAUCAGGUUUAAUUAAGCGUGUAAUCUUAAGUGAGCACACACAAUGAGUCAAUGAGAGAGAGAUAGAGACAGAGAGAGACGGUCAUGCUUGGCUCCUCGCACGCCAUCCGCAGUAGAGCCAAACGUACGAACACAAUGCCUGAAUCUCGCCGGGAGAAGGCAGUUGUUUCAACUGAGUUUGGCAGCUACGCGAGUGGCAUACAGGGAGCCAGGCAUAUCCCCUUUUUUUCACCUCUCUUUUGCUUUUCAGCUUCCAAACCUUCUGCAUCCUUGCCAAUAUGCCAUGUAUUCCCUUCUUUCAACACUGCAGUGCUCAUCUCACACACACACCCCAAUGCUAGACUCAAAGCCCAGAACACUUGGAGAAGAGAAGAGAAGACAACAACAACUCCUAUAUAUGUACAUCAACACAACUACUACUACUCCACCAAAGCCAAGAGCUCAGCUGGCAUGACAUUGUGAUGGAGAUGGCAGCUGGAGAAACAAGAAGAAGAAGAAGAAGAAGAAGAGACAGUACACAACUACACACACACACAGAAAGUAGUACAAGAUGAACAAUGGCGUUCGUACUACAUGUCUGUUUGGUGAGAAGAGAGCUUUGGAGAUGUGCAGGAUGGGGAGGAAGACAAGCUUCUUGUUGCUCGCCCCUAUAAAUAGCUGCAGCUGCAGCUGCAAGCAAAGCAAAGCAUAGAGAGAGCUCUGCCUCAAAGUGCCCUAUUCCCCUCCCGUCCCAUCCAAUCUCACACAGGCACACAUGCGCGCACAUUGCACGCUCCUCCAAGCUACUAGCAUGCAGCAACUGCUGCUGCCACAAGUAGUAGUAGUAGCAGCUCAUCGUUCAUCAAGCUAGCGCCACACAGAAGCUCGGCUUCCCGAUCCAUCCAUAUAUACAUGCACAAGCCGCAUGGCUACAAGGAUUGGAAUAAAGCGGCGACGACGCCCCCAAGCAUGAGGUGAAAACCCUACACAGUGUGAGCCCUAUAGCUGGCACUGUGUCAGGAGGUUGAUGUGAUGGAAAAGUACUGAAGUUUGGAUCCAAACUUUGGAUCUAAACACGCCCUAAAUUUGACACAUUAUUUCAAGUUGUAGACGACGCAUCCGUCGAUAGCGAGACGCGCUUGGUGACUUCGUCAAUCUCAAGAUAUGCUAGCCCAGUUUUAGAUACUCAUGGGAGUAGGAAGUAGGAUGCACGUGUGUGCAUUUAUAGAAAUGAGUGCCCACGCCCUAUCAGCAACUGUGUUUGUAUUGUGUUCUAAAAAAAUAUAUAUUUGUGCUAGCUUGUGUGGUGAUCACCAGUGGGCACGGAAAAUGCAUAUAAAAAUGUUGCGUGGAUUGUAUAUAUGCAUGUAUGCUCUCUUGUAUGUACGUCGAGAGAAGCUAUGGUAUGUAAGCUUUUUGUGCGUGAUGUGUGCUGCAAAGCCUUGUUGGCUACUAGUACAAAAAUUGCGAUUGCGUG

Sequence
(OSA-LNCN4077.2):

AGACACUGUCACUUUGUACACUGAUAGAGCAACAAUGCAGUGUAAUGCUCGACUGCAGCUGGUGUGAGAAAUGGCUUUGUUUUCAACUGGCCUCCUUAGGAAUGCAAGGCAUCUGGAGAAUCUGUGAGAAAGGACCAACUAAAUCCCUUACACAAGGGUAGGAUGGUUGAUGGAGUUUAGGAAUUUGGUUACCGACCGUUCAUGUCAGUACUAGAUGUUUUCAGUUUCCUAGGUCAUGCUAUGCAGGAACGCGGAACCAAACGUCUAUCUGAGGUACAAAAUGCCUUGUGGCCCUAGCAGGAGGAUAUAGCAUUAUAGCUUGAUUGAUGCUGGGAGUCAAUCGCAUGAUACAGUCCAUACUACCGAUCAGGUUCAGUUCUUGAAUCCAAGCUAGACUCUGGAACAGACGUUUUAGCUUGUUUUUUCAUAACUAGACGAGUUGAUCAGGAUUGGGG

Sequence
(OSA-LNCN4077.3):

GUCGGUAUGGCGCUCGCCAUACCUUGAUCUCCCGCCGGACCCCCCCCCCUCCUGCAGCGAAUCCCAGGUCCCAGGGCGGUGACUCACAUGGCGAUGGCGGCAUCGCUCCGAGCCGGCGGCGAGGCAUCCAACUGCCGAUUGCCGAAGCCAAUCCUGCCCACAGCCCACGUGCGAACAGGCCAACCAAUUAGGCUUUUUUUUGGUGUAAAUGGGCCUUUUCACCUGUUGAACAUGAAACCCUAACUCCAAAAUUCCCCAUCCCCCAUUCCCCAAUCCAAUCCGGGCAUCCGACUGAGGAGGCAAGCGCCGACGGCCGACGACGACACUGUGACUCUGCGACAGGGAGCUGCGAUGGCCGGUGGGGGCUCGGCAGCUGGCGGGGUAGGCGGGUGCGCGGCCACGCUGGGAGGCAGGCAGCAGCUAGCCGGCCAGGGCCAGGCAGCGGCGCGGCGGCGUGGGCGUGCUGCGGUGCGGCCGCGGGAGGCAGGCGGCCAGCGCAGCAGGGCAGCCGGCAACAAGCAGUGAGCCACAGAGCCAGUGAGGCAGGCAGAGGAGAGACCGAGAGAGGAUACAUAUUCUUCAAAAGUUCAAAUGGAUAGAAAGAGAAAAGGAAAAGCAUUGUCUUCACAAAGAGUAGAGAUGGAGGAGGAGGAGGGGCAGAUGGAGGAGCAUGUUGUCCAAGAGCUUGGGGAAGAACGUGUUGAAGAGAAUUUUGAAGGACCAACUAAAUCCCUUACACAAGGGUAGGAUGGUUGAUGGAGUUUAGGAAUUUGGUUACCGACCGUUCAUGUCAGUACUAGAUGUUUUCAGUUUCCUAGGUCAUGCUAUGCAGGAACGCGGAACCAAACGUCUAUCUGAGGUACAAAAUGCCUUGUGGCCCUAGCAGGAGGAUAUAGCAUUAUAGCUUGAUUGAUG

Sequence
(OSA-LNCN4077.4):

GUCGGUAUGGCGCUCGCCAUACCUUGAUCUCCCGCCGGACCCCCCCCCCUCCUGCAGCGAAUCCCAGGUCCCAGGGCGGUGACUCACAUGGCGAUGGCGGCAUCGCUCCGAGCCGGCGGCGAGGCAUCCAACUGCCGAUUGCCGAAGCCAAUCCUGCCCACAGCCCACGUGCGAACAGGCCAACCAAUUAGGCUUUUUUUUGGUGUAAAUGGGCCUUUUCACCUGUUGAACAUGAAACCCUAACUCCAAAAUUCCCCAUCCCCCAUUCCCCAAUCCAAUCCGGGCAUCCGACUGAGGAGGCAAGCGCCGACGGCCGACGACGACACUGUGACUCUGCGACAGGGAGCUGCGAUGGCCGGUGGGGGCUCGGCAGCUGGCGGGGUAGGCGGGUGCGCGGCCACGCUGGGAGGCAGGCAGCAGCUAGCCGGCCAGGGCCAGGCAGCGGCGCGGCGGCGUGGGCGUGCUGCGGUGCGGCCGCGGGAGGCAGGCGGCCAGCGCAGCAGGGCAGCCGGCAACAAGCAGUGAGCCACAGAGCCAGUGAGGCAGGCAGAGGAGAGACCGAGAGAGGAUACAUAUUCUUCAAAAGUUCAAAUGGAUAGAAAGAGAAAAGGAAAAGCAUUGUCUUCACAAAGAGUAGAGAUGGAGGAGGAGGAGGGGCAGAUGGAGGAGCAUGUUGUCCAAGAGCUUGGGGAAGAACGUGUUGAAGAGAAUUUUGAAGUGUGAGUGUGUGCAAAUGAAGGGGCAAGGAUGCAGCAAUUGAGCAGAAAGAAUGUACUACUCCGUAUAUAUAGAGGCUGAAACUAGCAUUAGUGUUAGAGUUUGUGUCGAACAUGUGUACAAAAUCGGUUACAGUUUAGGACUUAGAGUUGUACUAGGUAUAGGAAUAGAGUAUGAGUCGGACUAUAUCCUAGGAUCUCUCAUAAAUAGAGGGGCGUGCCUCUUGUAACCGCAUGGCGACUUAGCACAGCGAGAGGGAGCGGCUGCCGGCAGUGACCAGCCGUGAGUCGUUGUAACUCUGAUACGCUGUAAUAUGCUAGAUCGGGGAGGAACGCCCGCAAUCAGUGACCCAGAGAUGUAGGCCUCGGCAGAACUUCGUUAUCAAAUAUCGUGC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

382

LEP:

77.64%

ME_num:

85

MEP:

17.28%

HE_num:

24

HEP:

4.88%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.86

Avg Expression:

10.56

Tip: OSA-LNCN4077 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN2.158053737501151.76343088653473e-18
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN2.39254287040574.15002662555843e-26
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-5.078509157771722.64021536795003e-07
4Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi3.262794272782350.00582937128309872
5Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day"-1.525129182152030.0473672334636812
6Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"3.449052891911451.90337198935066e-06
7Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days"2.556675324870552.83453477876646e-07
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.07290413373860.000474765302854411
9Baldo // root // control--/--Baldo // root // 100 mM NaCl-1.233569407989590.00257154215367348
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-2.007082736387941.68910443796368e-05
11Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN2.215773189946043.70537954702059e-23
12Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-3.27976524347412.04080400146994e-05