Chr:
Chr3
Start:
32362319
End:
32363594
Strand:
+
Ref_name:
OSA-LNCN4075
Sequence
(OSA-LNCN4075.1):
GCAUCUAUUAGGAUAAUACUAAGAUAUUAAAAUUUAAGAAUCAUAUGUAAAUUACAUGGCUGGAAAUUUGAUAUUUGGGCAUCAUAAAAACUUAAUUAUACAGGUUAUUCUUUAAUUAACUCAGCCACACCGAACCUAAAAAAAAACACAGCUGUGUAGUUGUGUCAGGUUAACUUGACCAUUUUUGGCCUUUUAACCUGGCAGACUAAAAAUAUUGGUGUUCUAAAACUAGGACUUACAAAGAUACAUACAAAUGAAUGGGUACCCAACCUUGUAGGGCUUAAGCCACAUAAGCGGUCAAUUAUGCUGUACAGGCUAUACAGGGUGGGUGACCGCAGAAAUAAGUCUCACUACUUUUCAGAACUCCACAAAAAUCCUAUAAUUGAAGAGGCAUCUUCCAAAUAUCUCUGAUGUGGAAAAAUAUUGUUCUACCCUGAUAGGCAGUCACUCAACAAGGACGCAAACUUUUAACAGAAACGAUAGCAUAAUUCAUUAUUUAGAAGUCAUAGAUUGUUUCAAUUGACUCAAAAAUACUUUCGUAUAAUGCCUAAUGUACCUGGUGAUCCAACGCCGACAUAAAUAAAUCCAAGUCAAGUGGCUGCUGAAGAACAAUGCCUCAUUCCCCGCCCACAAAACCAAACUUUUAUCUAAUCCCAAACUAGCCAUAAACAAUUUCACAUAAUCACCCCUUAAAACCUCUCAUCUACCUGCUAGCCAGAACCGUCCACAAAUCACGUCAUCAACCACACGAAACCAAAACGAUCUCCAUAAAUCCAUCGCGGCACACAAAGAAACUCCUCCCACGCCAGUGGAUCUCACGUUUAGCCGUUAGAUGAAACCCAUUCGACCGGAUCCGAACAACACACCGUGAGAAGGAUCACGAGGGGGCCCUCGAUCCAGACCACGCAGAUCUAAACCACCCCCGCCGCCGCCGCCCGCAGGCACCACAACCAAAACGGACCGCCGCCAACGAACCAGAGCAGAAUAGGGAGGAGGAAGAGGAGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.46%
ME_num:
MEP:
88.62%
HE_num:
HEP:
7.72%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.44
Avg Expression:
3.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.16161912384005 | 0.0479571958078605 |
| 2 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 7.05521751736458 | 0.00271632620212542 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.86222633457603 | 0.00793449348793717 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.14898474760267 | 0.0201070792726316 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.00556280973429 | 0.0356077721772152 |
| 6 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.07614037130607 | 0.039503577888647 |
| 7 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.07605988208519 | 0.0401130235753064 |
| 8 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.07591281565076 | 0.039644581568214 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.26334799937812 | 0.035457721245574 |