Chr:
Chr3
Start:
32248508
End:
32252751
Strand:
+
Ref_name:
OSA-LNCN4064
Sequence
(OSA-LNCN4064.1):
CAAAACUUUAAGCACAGAUACCAGUUUACAGCUCAAACUGUAAGAAGACGCAUAUGCAUAGGCCUUCGCAGGCUUAGGUAUGUAACAUGACUGUUGAUCAUUAGAAACCUUGUGCUGGAUAACAUGUUCAGGUUCUCAACAAAAUUUAUGUUCAGACAGUCCAGAUCCUUAGCCCCAGUCACAGGUUCCUCAAACUGGCGCGGCCGUCGGCUUCGGAUCGGCGUUGGCGGCGCGCUCGUCGGCUCCGGGGAGGCCGAUCGGAUCAGAGAUGCAGACCUCUAGUUCAACAUACUUUCUCGACACCUCUCAUUCCGAGACCAUCACUUGAUGUAUGUACUACCUUUCUUAGUAUCGAACUAAUCUUCCUCAUCGUUCAAGCAUGGCUGGUCUGAGCCCGUAAUUGUAACUAUCAGUUUGGGCAAGAGAUCUGCACUACUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.63%
ME_num:
MEP:
54.67%
HE_num:
HEP:
43.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.56
Avg Expression:
10.65
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.06966012266207 | 0.0151236637730813 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.24373356380744 | 0.00323771467085251 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.23126366115451 | 0.0196746681965484 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.16102334431474 | 0.0187317944285333 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.38225076861486 | 0.00493834293074625 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.41268527672566 | 0.000555822757457422 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.40276434211632 | 0.00264380876046056 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.01213993007447 | 0.00522893898264317 |
| 9 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.07789905839582 | 0.000182812565975085 |
| 10 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.2411434213372 | 0.00175248578679164 |
| 11 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.02111666260302 | 0.00116330688859753 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.33701643241419 | 0.0029299865846388 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.13150934631246 | 0.00263201564805422 |