Chr:
Chr3
Start:
32237292
End:
32258041
Strand:
-
Ref_name:
OSA-LNCN4063
Sequence
(OSA-LNCN4063.1):
CAUUUAAUGAAUUGAAUGGCUUUUAUAGAAAUUAAUUCUUAGGAAACCAAAUCGUUUGAAAUUCAUCCAAAACGAAUAUGACCGUACAUCUUUCAUCUUGGUGACAUGUUCGGAUAUGGACGGUUCAUACCGGACCUGCUCAUCGCAGCCAAAGCUUAGGAUGCGAUAAGAGGAGGACAAUUGUAGAAUAUAAUAAAGUUAAUGGUAACAAAAGAGAUUAAGAGUGGAUCAAAUGCUACCAAAUUAACCCAAAAGAUAUAUAGGAUAUGCAUGCUACCAAUUUGAGACGUUGAGAGAAAAAAAGGACAAUAUUAAUGUCGUGGAGAGAUAUACUAGGAUAUAUAACAGUUAAAUGCAUUCUAAAUGAUAUUAGGAAUGGAUCAUCCAAUUUCUCUAUAUAAACACCUAGGAGAGGAUCACCAAACAUAGGGAACUAAGGAUAGGCUAGCUACCACCACUCAUUAGAAAGCUAAUUCCCUCUAAAUCUGAAUAUGGCUCUUCUUGGCAAGACUAGUUGCAAGGCUGCCGUGUUCUUGGCAGCUCUAGUGGUCAUGGCUACUGCUUUUUCAUCCUCUCAUGCUGCCCAAGGACAAGGCAAUGUAGGCGAAGAGAAAAUGGCGUGUAAGCCGCUACAAGGAUGCAACACAGAAAUGUGCAUGGGCUACUGCCAAAUGCUCAGCUACCAAGGAGGCACCUGCAUACACAACGAUCCUGAUAUGUGCUGCUGCCCGUACUAAGGUCUCGUGUCCAAUCACACGGAUUAAUUGUUAGAUUUAAUUGGGUAAUUAAUCCAUUUAAAUUAAUUAAAUCAAAUAAAUUCCAAGGCUCAUUAUGCUAGGAAUUCAUGUGAAUUCAUUCUUCUAUGGGAUAUCAAUGGGAUGAAGAGUUUUGAGAAUUAAUCCAUUUGAUUAAGGAAUUGGUAACUUAUAUCAAUUAGUCCUAAUUGAUGGAUGGUUGAUGGUUGUGUAGUGGAGGAUGGUUCAUGGCUAGUUGAUGACAAUUAGUUGCUAUAUUCCUCUUCCUAUUCCAUUGGUAACUUACAUCAAUUACUCUUAAUUGAUUGUUGGUUGAUGGUUGUGUAGUGGAGGAUGGUUCAUGGCUAGUUGAUGACAAUUAGUUGCUCCAUUCCUCUUCCUAUUCCAUGACUCUUACUCUUCAUCUUCCAUUCCUCUUAUAAAAUGGGAAUGGAUUUGAUCUCCCGCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
3.66%
HE_num:
HEP:
96.14%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.69
Avg Expression:
41.30
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.82696043788247 | 1.25206125807051e-05 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -2.77129446941426 | 0.000159589105182659 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.46111678806506 | 8.9214521294974e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.07645319280732 | 0.00969019476669225 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.40407020150188 | 0.00167237636931041 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.78769254838172 | 1.67430850222967e-06 |
| 7 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.92673102341116 | 0.00419597360923756 |
| 8 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.904586196707 | 0.0285082716152814 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 2.2750929860156 | 4.37883705922197e-14 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 2.29757801084591 | 2.19475640345789e-06 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.81977485501335 | 5.51249135786691e-07 |
| 12 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.98651914267774 | 2.46596210773098e-08 |
| 13 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.68837869056878 | 1.85169408868002e-26 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.32877797359878 | 0.000982226326633696 |
| 15 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -2.1509604945042 | 0.0106455248968448 |
| 16 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -2.94098178169467 | 0.040710861718676 |
| 17 | 9311 // leaf // control--/--9311 // leaf // salt | 1.41002566461117 | 3.60522094116175e-19 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.88190663850656 | 2.91842672484989e-06 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.49341506863639 | 2.6956172306501e-05 |
| 20 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.30858789622915 | 1.65115026578099e-60 |
| 21 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.40679178019199 | 0.00571631304529642 |
| 22 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.55419650732477 | 0.043614336272852 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.14222393316452 | 0.00443969740536547 |
| 24 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.23770158350498 | 2.53897980941725e-10 |
| 25 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.0445775816577 | 8.4914520547445e-19 |
| 26 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.2544579183106 | 0.0001168231632722 |