Chr:
Chr3
Start:
32031952
End:
32032405
Strand:
.
Ref_name:
OSA-LNCN4056
Sequence
(OSA-LNCN4056.1):
CCGCAUCAAAUCCAAGGCGGCAUCGAGUCACCAUCAUCCAUCCACGGAUCGAUCGUUAAUUUUGUUCGGGAGCGCGGACUCAUUCCUCACCAGUCAGCAGCAGCAGCACGGAGCCGUUUCACGUUGGUGAGUCAGGCGCCGGAGCUGUAGACAUCUUGGAUCGCGGCGACCGAUCGACAGCGCGAGCGAGCUGUCGAUCGCGCGCACUGUGCGCUCCACGAGCGGAGCCCGGAAUGUCUCGGGGAUCCAAUGCCCAACCUCACGUACUACUAGUAGUACCUCCAAGUCGAAGGUCAGGUCGUCAUAGAGAUGCCCAUGCCGCCAUGCGAUCUCAUGUGCAAGAACUGUAGAGAUUAGUGGUACUGGUAAUUAAAAGAUUAAGUAAAAUGAAGGGCACGCACGGGUGGGUGCAGGACUGCAGCAGGUGGCUAAUCUAGCUGGAGCACGAAAAAGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
96.14%
ME_num:
MEP:
2.64%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.99
Avg Expression:
1.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.30310073649229 | 0.0458419169719666 |