Chr:
Chr3
Start:
31764884
End:
31767145
Strand:
-
Ref_name:
OSA-LNCN4053
Sequence
(OSA-LNCN4053.1):
UACCAAUUGUAGGCUGUAGCGAUCAGGAUUUUUUAUAUUUUAGCCCUCGUGUUUCUCUCCCUCCCCUACUGCCUCUCUUCCGCCGGCGGCGAGCCGGCGACGGCUCACGGCUGCCUUCCGCGGCGUCGCCGAACGGCAGUCUUAUCGCCGUGCCGCUUCUCUGAAUCUCCGCCCAUCACCUCCUUUCCUUAAGCGGGAAGCACUACGUCUCCGAGUAGAGGGCGCGGGGAAGCGCCCAUGGUCGCCACGCCGUCGCGGUCUCCAUCGGCCACGGCAAUGAACGUUGCUGCUAUGGCCACCGGAGCCUGGUACUGAAGCGCACCAUUGAACUGACGAGGUGAUCCGUGAUCAGCGCCUCAAGAGCCUUCCCUGGUUUGGCGGAUGAAUCUCUGGCGGGUGCAUUCUGGGCCCGCAACUUGCUCGACGAAAUGCCGACCACGUGUUUCAUUCCUCUGUGGCUCUGUCUGACGCAACAUGGUUACCAAGAUCAAGCCGUUGGCACCAAUUAGAGCCGAAAUGAUCGAGAGCCCGACUCGGAGUGGCACUCUAGCAGCUGAAAUGGCA
Sequence
(OSA-LNCN4053.2):
UACCAAUUGUAGGCUGUAGCGAUCAGGAUUUUUUAUAUUUUAGCCCUCGUGUUUCUCUCCCUCCCCUACUGCCUCUCUUCCGCCGGCGGCGAGCCGGCGACGGCUCACGGCUGCCUUCCGCGGCGUCGCCGAACGGCAGUCUUAUCGCCGUGCCGCUUCUCUGAAUCUCCGCCCAUCACCUCCUUUCCUUAAGCGGGAAGCACUACGUCUCCGAGUAGAGGGCGCGGGGAAGCGCCCAUGGUCGCCACGCCGUCGCGGUCUCCAUCGGCCACGGCAAUGAACGUUGCUGCUAUGGCCACCGGAGCCUGGUACUGAAGCGCACCAUUGAACUGACGAGGUGAUCCGUGAUCAGCGCCUCAAGAGCCUUCCCUGGUUUGGCGGAUGAAUCUCUGGCGGGUGCAUUCUGGGCCCGCAACUUGCUCGACGAAAUGCCGACCACGUGUUUCAUUCCUCUGUGGCUCUGUCUGACGCAACAUGGUUACCAAGAUCAAGCCGUUGGCACCAAUUAGAGCCGAAAUGAUCGAGGGCGUAAUCCAGAAUCAGCAAUCAGCAGUGGUCACCGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
49.59%
ME_num:
MEP:
23.78%
HE_num:
HEP:
26.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.86
Avg Expression:
36.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.41897455608039 | 0.00800603479291785 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.73827797887219 | 2.35724036197907e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.41410360193513 | 5.94033795564269e-06 |
| 4 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.30056246407066 | 0.0201545977180785 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.11278680720006 | 5.80834642695697e-12 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.07803767615381 | 0.00592851319451117 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.00908780196796 | 0.00275035764319037 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.91383239733449 | 0.000262054397383571 |
| 9 | 9L136 // leaf // control--/--9L136 // leaf // salt | -2.68824456800195 | 1.32313909759812e-06 |
| 10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.37190074227383 | 0.00415956445122053 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.09090283217391 | 2.50931938149754e-05 |