Chr:
Chr3
Start:
31630659
End:
31631428
Strand:
-
Ref_name:
OSA-LNCN4049
Sequence
(OSA-LNCN4049.1):
GGAACGAAUCGGGGGCCAUCUGCGCGACAGGGACCGGAGCACGGGCCACACGGCACCCGGAACCAAUCUUUCGCCCGAUCUUUCUCUAGUUUUCCCCCUGCGAAAAUAUGAUUCACGCUCAGGCUCUGGUUCGGCUGGGUUGGACGGAAUCUGCUCCCAAUCUUUGGCGAUUUGGACGCCAACUAGAAUCCGCGUGCUCGUAACAGCGACGCCACCACCGGGGGCGUUCGCCGAGAGAUGCUUUACAGCGUCUCUUCCUCGCAUUUCUCAAGUGGUACCACUACUGCUUCCUGUCAAGAAUCUUGUCACGGCUCACUAGUAGCAAACUGUGCUGGGGCUGCUGCGAUUUUGACAGAGAAGGGGCACGAGGAUCCCACGGUUCCAUCGGAGGGAGCCCACUUCACAUGGACGGACGUAGCGCUGCAACCACCGCCUGACGGCGACAAGUGCCGAAGGAGACAGCGAACGAUGCCACAGUUGGCUGGAGGAGAAACAGAAUCGUGUCGAGCUGAUCAGAUUCACACAAUCAUCACUUGACCGGAAAUAACCAGAUUCUAAUCGCCUUUGCAUGGAUGAAGCAACUAUGCACAGCCAGAGAGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
89.84%
ME_num:
MEP:
9.55%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
1.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.28731809297304 | 0.0339885958814596 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.32729210619011 | 0.000296513142689311 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.86535770945105 | 0.0011081816141555 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.05975078880283 | 0.0104159518965141 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.80356803506755 | 0.00133628320009983 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.33002038424915 | 0.00234275697395087 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.89907771816862 | 0.00499981243119132 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.58505563669012 | 6.40158608001922e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.33749570276984 | 0.0324303100498967 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 6.32970748674296 | 0.00841866033229196 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.00015202414518 | 1.71713498248935e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.81922115576198 | 0.000499805445785607 |
| 13 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 6.61337153720953 | 0.00206339021955314 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.12797140193184 | 0.000130917301271396 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.48279098110385 | 3.97344533150264e-07 |