Chr:
Chr3
Start:
31603005
End:
31604231
Strand:
-
Ref_name:
OSA-LNCN4046
Sequence
(OSA-LNCN4046.1):
CCGAGUUGGGCUUUCCGCCUCGUGCUGCCCCGAUGCUUCUUCCGCUUGGCUGGCUUUGCUUGCCCGCGUACGAGGCGCGCGUUGAAGCGUCGACGGGGUUGGGCAGACGCGAUGUACGUAUCUACGCGGGGCAUGUUUCACAUGGCGUGGCGCGGGUUUCGUGCGAGACCCGGCGGUGCACACGUCUUCCGGGGGAUUCGGGGUGUGCUCGUUCUAGACGUGAUCUUGAGCUGACGACACGGUGAUGGCAUAUGCUACUCCUACCCUUUUUUCUUUUAACAGGAAGUUGCUGCUGCCACGACGGGACGGAAUUGGUGCGAUACUAGAAGCAUGUUUGGAUGUUUCGUUCUACUUUUACCCAUUCAAGGGGCGACGCAUCCGUUUCCUUUCUCGGCUGAGCCAAGUCCAACACUCAAACCCGCUGCAACGCCUGCCUUCCUGGACGUUGCACUGCCAGUGCAGUGAGUUUUGUUUUUGCGACGGCUGGUGAUCACAUUCACAUAGGCCGCGGCUCUUUGCAAUUCCUUCCGUACGUGGCCUUGCUCCGGUUCCUCCUCUGUGCGCCGCGCGAGAUCUCCUCGGGCGGCUGCUGCCAUCUCACGCCCGGCGCCGCGGCGACCCCGCGAUUUCUCGCCUGGCCACGCUUUCACUUCCACAGUUUCUCUCACCCACGCGGCUUCUUGCUCGGCCUGGACUCCAAACUCCAAGCCUAGGCACAUGUUCCGUAGGGCUUUGACAAGGCGGCAGGAUACACGAAAUGGGCCAAUGGUGAUUAUUAUAUGGGUAUAUUUUCCGGAGAGAAGACUAAUUUGGUGGUACACGAAGUAGUACUCUUUGUAUCAUCUUCUUUUAACACGCAACAGCUUUGCGCAUCAAUAUAUUAGAAAAGAGCAAACAAUCUAUAGCUGACCAUACAGCAUAAACUGGCAGUGGGGGCAAGAGAUUAGAAUUUAUAGAGGCUGAAAUACAAACAGGAGCGGAUCUACCCAUUAUGUGGGGUGGGUCGACCACUCAGCUACGACUCGUAUCGCCCCACACUCUCAAGACCCCCUUAUCUCCUUAUAGUAGUUAUGGGCCAUCAAAAUUAGGUAUAACAAGAUAUAAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.33%
ME_num:
MEP:
15.04%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
2.19
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.59892632726306 | 0.0214898129474803 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.8502481032275 | 0.0106599190031352 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.09335709844667 | 0.047823555482744 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.94420911793939 | 0.0270163614133722 |
| 5 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.67489866479976 | 0.000777082868923755 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 7.38090366870344 | 1.87677641192199e-08 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.73279898876943 | 0.00188107788332708 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.337363973799 | 0.00206847704311818 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.99694211049919 | 5.04015179136679e-05 |
| 10 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 6.82820853208218 | 0.0221667057439093 |
| 11 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 6.88315513053646 | 0.00739963766044464 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 3.85596136484885 | 0.000119283276676846 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.3074563816306 | 0.0411158589603067 |
| 14 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 4.57149577641961 | 0.00133090768580452 |
| 15 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 3.82499905494973 | 0.00252059248297792 |