Chr:
Chr3
Start:
31549864
End:
31550945
Strand:
+
Ref_name:
OSA-LNCN4040
Sequence
(OSA-LNCN4040.1):
CGAUCUCAAUAUCUCAUGCUCACGUUUGGUGGUGGUUGCUGUUCGAUCGUCCAGUCUCGCAUUUCUCUCUUUUUCUCUCACGUUUCUCUCCCGUUCCCAAAUCGAUUGCAUCGAUGUGGCGGCGGCGGAGGCGACGGGGAGACGCGGCUUCGUCGGCGGCGGCGGAGACGCGGAGGCCACGAGGAGACGUGGCGUCGUCGGAGGCGGAGGCAACAAAUGGAUGCUGCUUCGUCGGCGGCGGGGGCUUGUAUGCCUAACUGCUUAUCAUCCCCGGAAGAAGAUCUGAUGCGGUUGCCUGAUGCACGAGCUGCGUUGUUCUUGUGUUCAUUGUGUUCAUGCACUGCAUUUCUUUUUCUUUGGGUUCUUGCCAUGUUCAUGCGUGCGUCAGAUGCUUAUGCAGAGAAAUGACAGUAGCAAUAGCAAAUGGAUGUUGUCACGGAGGGCAUUUUCGCCUUUUCACGUGAGUGCUAAAUUUGCAUGGGAGGUACAGGAAUCGCUUCUGGAUGGAGGGAGUACCUGGUUCUGUUUAGGAUCUAGUGCGUACUUUGUCGCAGUCAAAUACGAUUGGUGAUGGUGAAAGUGAAACCUGCUUGAUGUGAAAUCAGUUUGUUUCCAACACAUGUUCAGUUAUGCUUUGCCCUGUUUUCACUUUAAUACUACCUCCGUGUCAAAAUAAGUGCAGCUAUAAGUUUUCGCGUUCAACUUUAAUCGUCCGUUUUAUUUGAAAUUUUUUUAUAAUUAGUAUUUUUGUUCUAUGAGAUGAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
46.54%
ME_num:
MEP:
47.36%
HE_num:
HEP:
5.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.87
Avg Expression:
4.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.50058801191239 | 0.0293902508579646 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.58866324050883 | 0.0205416826757929 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.76226897180946 | 0.0496613532233176 |
| 4 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.39569354301492 | 0.00761624119569625 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 1.31430228989862 | 0.026511161967323 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.34590721926377 | 0.00336001382782014 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.04781823307984 | 1.00268956756115e-11 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.88891907044166 | 0.00832894844140384 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.33168116180605 | 0.0382623462996316 |
| 10 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -5.36163585635005 | 0.00167321882235007 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.04483426816451 | 0.0316217606755922 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.8844134710931 | 0.000689003503809572 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.50341624760101 | 0.0181135367140167 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.33860599596606 | 0.0477855419563181 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.81179580343871 | 0.0404341183377146 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.16942516389582 | 0.0218259886925688 |